PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00347.1.g00040.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 702aa    MW: 75294.7 Da    PI: 6.6247
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00347.1.g00040.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.14.9e-141562148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  +g+WT eEd+ lv ++ + G g W+  ar  g++R +k+c++rw++yl
  Zpz_sc00347.1.g00040.1.am.mk 15 KGPWTLEEDLVLVSYISENGEGAWDNLARAAGLNRNGKSCRLRWLNYL 62
                                  79********************************************97 PP
2Myb_DNA-binding40.27.8e-1368111146
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                   rg+ T+ Ed  + ++    G++ W++Ia++++ gRt++++k++w++
  Zpz_sc00347.1.g00040.1.am.mk  68 RGSITEAEDAVIRELQSTIGNK-WSKIAKHLP-GRTDNEIKNYWRT 111
                                   7889******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.6091062IPR017930Myb domain
SuperFamilySSF466896.25E-2813109IPR009057Homeodomain-like
SMARTSM007177.7E-121464IPR001005SANT/Myb domain
PfamPF002494.2E-121562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-181668IPR009057Homeodomain-like
CDDcd001671.83E-81762No hitNo description
PROSITE profilePS5129423.24163117IPR017930Myb domain
SMARTSM007172.1E-1267115IPR001005SANT/Myb domain
PfamPF002492.5E-1168111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-2269116IPR009057Homeodomain-like
CDDcd001671.50E-972111No hitNo description
SuperFamilySSF537561.3E-35398672No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 702 aa     Download sequence    Send to blast
MEARTRGGEA AAVRKGPWTL EEDLVLVSYI SENGEGAWDN LARAAGLNRN GKSCRLRWLN  60
YLRPGVRRGS ITEAEDAVIR ELQSTIGNKW SKIAKHLPGR TDNEIKNYWR TRIQRKRPPA  120
LTMGAGAVSE GASSSSGWAS PDSSDAGAGA RDCWLFMQPK TEPQACLATG VIKSEGASSA  180
LASRDSSNAG DDWYTQASHP AYHSSSGLGL AADHLGTVGV DAATAAQFFS STSEFADGFW  240
NALNNFWETV PVKVDERPIA LSETGTLSTL GTVSTVQSLA SPSAAHAGQE KVRRSVGGAV  300
RDSTDLMLRR CHLFYFFERG CHLFYPSLGS VDRLRRSNAC VVAGCGNGAP GISGAALQVG  360
SGARGEASPS RRCSIDLSVS TSGKRLKSGE AMVIKDEHGP VHILFFPFLA RGHLIPIADM  420
AALFAARGVK CTILTTPANA VIIRSAVDRA NDGFRGSDAP AIDIAVVPFP DVGLPPGAES  480
ASAVNSPAGR DKFFQGIQLL CEPFNQFLAE NPQDAVVSDS FFDWSADAAA AHGVPRLAFF  540
GSSMFAQACT DSMLRNNPLE SAPENPDALV ALSELPHRVE LRRSQMLDPK KRQWHWDYFQ  600
RMNAADQRSY GELFNSFHEL EPEFLEYYAT TLGRRVWLVG PVGLASKDVV TRGATELSPD  660
ADGCLCWLDS KPAVLSDSDL VTIRESGFLA AIGALRILGP GL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-26151167107B-MYB
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00347.1.g00040.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7281931e-120KJ728193.1 Zea mays clone pUT6467 MYB transcription factor (MYB53) mRNA, partial cds.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40350.12e-51myb domain protein 24