PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00346.1.g00410.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | ERF | ||||||||
Protein Properties | Length: 466aa MW: 49502.1 Da PI: 7.7505 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.2 | 4.8e-19 | 220 | 270 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+tae+Aa a+++ + kl+ge Zpz_sc00346.1.g00410.1.sm.mk 220 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAAMAYDREAFKLRGE 270 59******9.**********955...5**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.16E-31 | 219 | 279 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 3.1E-32 | 220 | 278 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.998 | 220 | 277 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.04E-23 | 220 | 278 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 5.9E-39 | 220 | 283 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.8E-12 | 221 | 270 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.5E-11 | 221 | 232 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.5E-11 | 243 | 259 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 466 aa Download sequence Send to blast |
MDAVDRGGDG GGGRGRGRKW KGKAVSSAGA ERPQLAPVLE DAPAAAFLRP LKKTRSPDQL 60 LRSVSSLSSA PASPDSSSVS NPLSPQATSW PPTRQIFPFA YDPATAAASS EAALAGLMAL 120 PLFQYSGAYQ QQPLPPQQQQ LPVQRQQMIS FGGNDQQQQQ FGAASPLFPP QLVAPEVQQQ 180 MLLRYWSEAL NLSPRGFRGG AVPPALFQHL LRAQQGPPKL YRGVRQRHWG KWVAEIRLPR 240 NRTRLWLGTF DTAEDAAMAY DREAFKLRGE NARLNFPDLF LGKGRVGGSG RTSASAAASC 300 SSSSSSAPPT PDEIRAKQAQ EHHGEEPPAS NSEATPVLPE ADEAKNSKPQ TNSQAQAADQ 360 QSGDGNTAMF QPPVASSGSG VWGPADEAWF SAWGPGSSVW DYDMDNAHGL FLQSRFASES 420 TGMEYASSAQ DVPMTPAPAA GPAMAAASSS LPPPGPPPLP HSPTYM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-19 | 219 | 277 | 4 | 63 | ATERF1 |
3gcc_A | 1e-19 | 219 | 277 | 4 | 63 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 5 | 13 | RGGDGGGGR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00346.1.g00410.1.sm.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025809849.1 | 0.0 | ethylene-responsive transcription factor ERF054-like | ||||
TrEMBL | A0A2S3GRD6 | 0.0 | A0A2S3GRD6_9POAL; Uncharacterized protein | ||||
STRING | Si019997m | 1e-179 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3691 | 32 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20880.1 | 1e-36 | ERF family protein |