PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00330.1.g00130.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB_related | ||||||||
Protein Properties | Length: 284aa MW: 31612.5 Da PI: 9.2778 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.8 | 1.3e-09 | 142 | 185 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 WT E+ l++ + +++G g+W+ I+ + +Rt+ ++ + qk+ Zpz_sc00330.1.g00130.1.am.mk 142 LWTHHEHMLFLSGLRLYGRGNWRDISMLIE-TRTPLEVSIHAQKF 185 5*****************************.*******9999997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 11.518 | 138 | 190 | IPR017884 | SANT domain |
SMART | SM00717 | 9.1E-8 | 139 | 188 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 2.0E-8 | 139 | 188 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 6.9E-7 | 140 | 178 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 5.6E-7 | 142 | 184 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 7.48E-12 | 143 | 190 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.42E-8 | 143 | 186 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 284 aa Download sequence Send to blast |
MSPSQHSPLH NSNYQQLFEP LPTDMVPGQV TPKPNGVWSR SEIKTMKSLI RRHNNDVNNN 60 GKDIVDLLQE RFHYKEKHQV TDLYLDIVTE MMQTLQLQQG SGTASNINNP PPPVEEPAAM 120 DNAAVAVVPQ PGPAWYPARR RLWTHHEHML FLSGLRLYGR GNWRDISMLI ETRTPLEVSI 180 HAQKFFRKLG KAARTQRSSV NAKPCSQNPS KGKALATTDG GYNLGDSQSS SQLAAMNTQA 240 KVSSPFLYHV DQASSSGGSS QAAWTGDQQN FVPDELLEVF AQKL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00330.1.g00130.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP35267 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58900.1 | 3e-13 | Homeodomain-like transcriptional regulator |