PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00306.1.g00080.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 235aa    MW: 25144.1 Da    PI: 10.2734
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00306.1.g00080.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.57.8e-30158215359
                                     -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                            WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                     D y+WrKYGqK++kgs++pr+YY+C++  gC+++k+ver+  +p ++++tYeg+H+h+
  Zpz_sc00306.1.g00080.1.sm.mkhc 158 DDYSWRKYGQKPIKGSPYPRGYYKCSTVrGCSARKHVERDPGEPAMLIVTYEGDHRHD 215
                                     99***********************9888****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105336.7E-17121154IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.807.7E-31145215IPR003657WRKY domain
PROSITE profilePS5081130.331151217IPR003657WRKY domain
SuperFamilySSF1182901.83E-25152216IPR003657WRKY domain
SMARTSM007741.5E-33156216IPR003657WRKY domain
PfamPF031065.9E-25158214IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MTDQLVTMED LMRRVGGSVP GDARGGXXXX ASVLSRRTGH ARFRRGPVVV PPAEHLQQTP  60
DGAAAKMDAG LSASASSSHP STTLVSFTAT AGGEGSVSGG YGALFQSASD RARSENDDGA  120
GGKPRGGRCH CSKKRKPRVK KVIRVPAISS RNADIPPDDY SWRKYGQKPI KGSPYPRGYY  180
KCSTVRGCSA RKHVERDPGE PAMLIVTYEG DHRHDARPAP DQGIERHAGV DADRH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-201492151075Probable WRKY transcription factor 4
2lex_A3e-201492151075Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00306.1.g00080.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0946854e-98FP094685.1 Phyllostachys edulis cDNA clone: bphyem111b06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004952436.11e-67WRKY transcription factor WRKY51
TrEMBLA0A1E5V1I52e-67A0A1E5V1I5_9POAL; Putative WRKY transcription factor 11
STRINGSi017889m4e-67(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61738171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23320.14e-42WRKY DNA-binding protein 15