PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00301.1.g00290.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRAS
Protein Properties Length: 527aa    MW: 57450.2 Da    PI: 6.8512
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00301.1.g00290.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS346.64.2e-1061535261374
                          GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvsel....ykalppsetseknssee 77 
                                   lv+lL++cAeav+ +d ++a alL +l+  a  +g+++qR+a++f+++La rla   +      + a+   +   ++  ++
  Zpz_sc00301.1.g00290.1.sm.mk 153 LVQLLVACAEAVACRDRAQAAALLRELQASAPVHGTAFQRVASCFVQGLADRLALAHPPAlgpaSMAFCIPRLCAERDGTR 233
                                   689**************************************************9865544111122332233333446667 PP

                          GRAS  78 laalklfsevsPilkfshltaNqaIleavegeervHiiDfdi....sqGlQWpaLlqaLasRpegpp.slRiTgvgspesg 153
                                     al l +e++P+l+f+h +aN  Ilea+ege+ vH++D+++    ++G QW  Ll+ L +R++g+p ++RiTgvg+    
  Zpz_sc00301.1.g00290.1.sm.mk 234 GEALALAYELCPYLRFAHYVANASILEAFEGESNVHVVDLGMtlglEHGHQWRRLLDGLKNRAGGKPaRVRITGVGA---- 310
                                   788899*********************************97622226889*************77666*********.... PP

                          GRAS 154 skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvksl 234
                                     ++++++g+ L+ +A++lgv +ef++ v ++le+l++++L v+ +Ea+a+n++l+lh +++es    +   +vL+++++l
  Zpz_sc00301.1.g00290.1.sm.mk 311 PLDTMKAVGRELEAYAATLGVFLEFRA-VDRSLESLHIDDLGVRGDEAVAINSILELHCVVKESRGALN---SVLQTIRKL 387
                                   99*************************.799******************************88877777...8******** PP

                          GRAS 235 sPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekW 315
                                   sPk +v+veq+a hn++ Fl rf+eal+yy+alfd+l+a lpr +  r+ vE++ +g ei+nvv cega+r+erhe++ +W
  Zpz_sc00301.1.g00290.1.sm.mk 388 SPKAFVLVEQDAGHNGPFFLGRFMEALHYYAALFDALDAALPRYDARRARVEQFHFGAEIRNVVGCEGAARVERHERADQW 468
                                   ********************************************************************************* PP

                          GRAS 316 rerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                   r+r+++aGF++ p++  +a++a+  l+k++ + gy+v ee+g+lvlgWk++ ++++S+W+
  Zpz_sc00301.1.g00290.1.sm.mk 469 RRRMSRAGFQSTPIR--MATKAREWLEKHAdGGGYTVAEEKGCLVLGWKGKHVIATSCWK 526
                                   *************96..67899*******98899*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.772127507IPR005202Transcription factor GRAS
PfamPF035141.5E-103153526IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 527 aa     Download sequence    Send to blast
MGASEQLCNS TANSFSSSYV YSEQNLHLAP QDASPFSDHG LGFPSYYGCT DQSEAPFDGD  60
EVNLGFRASK ATRVDYISSP YGHPPMVRAD LASESSRVRK KRYWDLLESC KQKVEAMEAM  120
ESPVLADQES PDGFGMADGG VTRGGGGADG MRLVQLLVAC AEAVACRDRA QAAALLRELQ  180
ASAPVHGTAF QRVASCFVQG LADRLALAHP PALGPASMAF CIPRLCAERD GTRGEALALA  240
YELCPYLRFA HYVANASILE AFEGESNVHV VDLGMTLGLE HGHQWRRLLD GLKNRAGGKP  300
ARVRITGVGA PLDTMKAVGR ELEAYAATLG VFLEFRAVDR SLESLHIDDL GVRGDEAVAI  360
NSILELHCVV KESRGALNSV LQTIRKLSPK AFVLVEQDAG HNGPFFLGRF MEALHYYAAL  420
FDALDAALPR YDARRARVEQ FHFGAEIRNV VGCEGAARVE RHERADQWRR RMSRAGFQST  480
PIRMATKARE WLEKHADGGG YTVAEEKGCL VLGWKGKHVI ATSCWKC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-5416052526378Protein SCARECROW
5b3h_A1e-5416052525377Protein SCARECROW
5b3h_D1e-5416052525377Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00301.1.g00290.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0037910.0AP003791.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1065G12.
GenBankAP0067570.0AP006757.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0551C06.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814052.10.0DELLA protein RGL1-like
TrEMBLA0A2T7DCV40.0A0A2T7DCV4_9POAL; Uncharacterized protein
STRINGSi000959m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56403354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.14e-59RGA-like 1