PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00279.1.g00360.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | ZF-HD | ||||||||
Protein Properties | Length: 340aa MW: 37656.6 Da PI: 7.6394 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 93.3 | 2.1e-29 | 154 | 208 | 3 | 59 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 ++rY+eC++NhAa+lG+h++DGC+Efmps +e ++al CaACgCHR+FHRre ++ Zpz_sc00279.1.g00360.1.am.mk 154 QWRYRECQRNHAARLGAHVLDGCCEFMPSANE--GPDALACAACGCHRSFHRREASS 208 789*************************9555..59*****************9875 PP | |||||||
2 | Homeobox | 14.5 | 6.2e-05 | 240 | 296 | 1 | 53 |
TT--SS--HHHHHHHHHHHH....HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFe....knrypsaeereeLAkklgLterqVkvWFqNrRa 53 +r Rt+ft+eq +++ e+ + + ++p+ ++ +++g++ r+ kvW +N + Zpz_sc00279.1.g00360.1.am.mk 240 KRFRTKFTAEQKDRMREFAHrvgwRIHKPDYDAVDAFCAEVGVSRRVLKVWMHNNKH 296 789***********987655888779****************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 2.1E-25 | 155 | 206 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 2.0E-15 | 156 | 208 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 3.4E-24 | 156 | 205 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 24.448 | 157 | 205 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 6.4E-30 | 231 | 298 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.26E-19 | 233 | 297 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 2.5E-27 | 239 | 295 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 340 aa Download sequence Send to blast |
MEYKGSSHVE EEEDDMDEEE EEDDEEENRG RRYTTAPAAP VGAPQPQVVH GQAHGLLGSH 60 SSVTTESQSA AFSRPLLPPN SSLVSSQLPP PPGFLQPQRQ PQQAHPRKPE RGGGTQAQHQ 120 QVRLQQELAR NGTTPTPPSA STLALTTGAV VQPQWRYREC QRNHAARLGA HVLDGCCEFM 180 PSANEGPDAL ACAACGCHRS FHRREASSSE ELRGSAPARP LPPPQLAVGS ASAPPAPSKK 240 RFRTKFTAEQ KDRMREFAHR VGWRIHKPDY DAVDAFCAEV GVSRRVLKVW MHNNKHLAKM 300 PPHSPSSGQQ QPAPSHHHHH HHDHHHYPPP HQHHQQQHNA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 4e-21 | 238 | 308 | 16 | 80 | ZF-HD homeobox family protein |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00279.1.g00360.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU956759 | 7e-75 | EU956759.1 Zea mays clone 1572892 zinc finger homeodomain protein 1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | F2D298 | 5e-50 | F2D298_HORVV; Predicted protein (Fragment) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP815 | 35 | 145 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 4e-42 | homeobox protein 22 |