PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00275.1.g00220.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family SBP
Protein Properties Length: 442aa    MW: 47342 Da    PI: 7.3586
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00275.1.g00220.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP69.28.1e-22182230149
                                   --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSE CS
                           SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrf 49 
                                   +Cq+egC+adls ak+yhrrhkvCe h+ka++v   g+++rfCqqCsr+
  Zpz_sc00275.1.g00220.1.am.mk 182 RCQAEGCKADLSAAKHYHRRHKVCEYHAKAAAVSDGGKQKRFCQQCSRY 230
                                   6***********************************************8 PP
2SBP44.54e-142592884877
                                   SEEETTT--SS--S-STTTT-------S-- CS
                           SBP  48 rfhelsefDeekrsCrrrLakhnerrrkkq 77 
                                    fh l efDe+krsCr+rL +hn+rrrk++
  Zpz_sc00275.1.g00220.1.am.mk 259 EFHVLAEFDESKRSCRKRLTEHNRRRRKSA 288
                                   6***************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.2E-27176274IPR004333Transcription factor, SBP-box
PROSITE profilePS5114124.564180287IPR004333Transcription factor, SBP-box
SuperFamilySSF1036126.02E-21181232IPR004333Transcription factor, SBP-box
PfamPF031109.7E-17183231IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.35E-10259288IPR004333Transcription factor, SBP-box
PfamPF031102.6E-7259286IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MSPATTDADF AFAPMQPNLG FDVAGNSHQE QHNLYDNFVD FAAGFPFQQD SSMSLLPPQT  60
SPPLLAPPPC LAMTAMPSLS LNHQMPLPGV QNAEMCHPFN GSAGSPFLMK REDGPLVDAG  120
GGGGGRLGLN LGRRTYFSPA DVLAVDRLLM TRSSRFGVGM GMAGLLGLGL GAAHHHQPPP  180
PRCQAEGCKA DLSAAKHYHR RHKVCEYHAK AAAVSDGGKQ KRFCQQCSRY VHPRLPRAEP  240
HTCPTAEIGV TYYGHVTIEF HVLAEFDESK RSCRKRLTEH NRRRRKSASA QGGEDSSPPP  300
KKADTTSITT SYNSDQKSAS TVAAKSTAIT PNGSGVSCLD MADNNGHQTS SAAAAAPTAL  360
SLAAPPEKDS GGLDAILMMH GSRVHRDDDE DQRFILSLLL QAQQQQQHHN DGGHMLSCSS  420
SMPDQHQNGG GGRNGFFEVD FV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A5e-211832861184squamosa promoter binding protein-like 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00275.1.g00220.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002451645.21e-122squamosa promoter-binding-like protein 5
TrEMBLA0A1Z5RL611e-121A0A1Z5RL61_SORBI; Uncharacterized protein
STRINGSb04g005180.11e-121(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23753593
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.13e-31squamosa promoter binding protein-like 8