PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00268.1.g00370.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GATA
Protein Properties Length: 310aa    MW: 34776.4 Da    PI: 7.6597
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00268.1.g00370.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.73.2e-18242276135
                            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                                     C++C ++kTp+WR gp g+ktLCnaCG+++++ +l
  Zpz_sc00268.1.g00370.1.sm.mkhc 242 CAHCMSSKTPQWRAGPLGPKTLCNACGVRFKSGRL 276
                                     *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.1E-14236290IPR000679Zinc finger, GATA-type
PROSITE profilePS5011410.91240272IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.14E-13240299No hitNo description
Gene3DG3DSA:3.30.50.104.9E-14240274IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.35E-12241288No hitNo description
PfamPF003205.1E-16242276IPR000679Zinc finger, GATA-type
PROSITE patternPS003440242267IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MDLQSANAAA DSLGDLYLHQ AALESDDSNP DWLHIYEKDR FSSSASVPNP VSGKPITTMA  60
DQSAGNPTLL TSSYSNGRQR KRSLASVLSD DDDQYTIPLV IEPPLLLMDQ KHWMAESELI  120
LPQKEKDQEL CQQQGQEYEE LECEEGELTQ LPGEQLLKRC NRCLSCHALT WRHGPLDFKM  180
LCNACSPKVK PENRVTTATK KQCALGTNKK QEQGKRGDKK MIKKIANASE RELPEEPLMR  240
VCAHCMSSKT PQWRAGPLGP KTLCNACGVR FKSGRLLPEY RPANSPTFES HVHSNSHKKV  300
LQLRQADRHN
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00268.1.g00370.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004963249.11e-118GATA transcription factor 2
TrEMBLA0A0A8XNM81e-125A0A0A8XNM8_ARUDO; GATA transcription factor
STRINGSi022727m1e-117(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59623656
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36240.12e-33GATA transcription factor 7