PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00267.1.g00150.1.sm.mkhc

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

WRKY

Protein Properties

Length: 323aa MW: 35133.4 Da PI: 9.5344

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00267.1.g00150.1.sm.mkhc	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	95.5	3.8e-30	179	238	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYGqK+ k++++pr+Y+rC++a +Cpvkkkv+rsaed+++++ tYegeHnh Zpz_sc00267.1.g00150.1.sm.mkhc 179 VKDGYQWRKYGQKVTKDNPCPRAYFRCSFApSCPVKKKVQRSAEDNTILVATYEGEHNHG 238 58*************************99**************************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50811	26.199	174	240	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	2.3E-29	178	240	IPR003657	WRKY domain
SuperFamily	SSF118290	5.75E-26	178	240	IPR003657	WRKY domain
SMART	SM00774	4.0E-35	179	239	IPR003657	WRKY domain
Pfam	PF03106	5.3E-25	180	237	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence Send to blast
MDPWIGQPSL NLDLNVGLPT TRPAAPGKSM VLVEENFFSA NKDREQQVGA LEAELRRVSE 60 ENTRLNEMLR AVVAKYTELQ GHVNDMLAAG QNRQSSTSEG GSAVSPPRKR VRSDNSLDTK 120 PSPPLAAAAS GFAGHDQMEC TSGAAVAFHE PGRRIREEYK PKVTRRYAHV DPSDLSLVVK 180 DGYQWRKYGQ KVTKDNPCPR AYFRCSFAPS CPVKKKVQRS AEDNTILVAT YEGEHNHGQP 240 TQHDGRSAAK PPMTSSNNAA AAARALSPPQ QKQREAEVGP SSDAVRKNLA EHMAATLTRD 300 PGFKAALVGA LSGRILELSP TQQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	6e-21	178	240	13	74	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription repressor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:23462973). Regulates, probably indirectly, the activation of defense-related genes during defense response (By similarity). Modulates plant innate immunity against X.oryzae pv. oryzae (Xoo) (PubMed:21961049). Regulates negatively the basal defense responses to the compatible fungus M.oryzae (PubMed:23462973, PubMed:21726398). {ECO:0000250\|UniProtKB:Q6QHD1, ECO:0000269\|PubMed:21726398, ECO:0000269\|PubMed:21961049, ECO:0000269\|PubMed:23462973}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00267.1.g00150.1.sm.mkhc

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by biotic elicitors (e.g. fungal chitin oligosaccharide) (PubMed:23462973). Accumulates in response to M.oryzae (PubMed:21726398). {ECO:0000269\|PubMed:21726398, ECO:0000269\|PubMed:23462973}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ728368	2e-84	KJ728368.1 Zea mays clone pUT6650 WRKY transcription factor (WRKY114) mRNA, partial cds.
GenBank	KJ728369	2e-84	KJ728369.1 Zea mays clone pUT6651 WRKY transcription factor (WRKY124) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025810563.1	1e-165	WRKY transcription factor WRKY28-like isoform X1
Swissprot	Q0DAJ3	1e-133	WRK28_ORYSJ; WRKY transcription factor WRKY28
TrEMBL	A0A2T8JC06	1e-163	A0A2T8JC06_9POAL; Uncharacterized protein
STRING	Pavir.J39636.1.p	1e-162	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1822	38	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80840.1	6e-56	WRKY DNA-binding protein 40

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Zhang Y,Wang L The WRKY transcription factor superfamily: its origin in eukaryotes and expansion in plants. BMC Evol. Biol., 2005. 5: p. 1 [PMID:15629062] Wu KL,Guo ZJ,Wang HH,Li J The WRKY family of transcription factors in rice and Arabidopsis and their origins. DNA Res., 2005. 12(1): p. 9-26 [PMID:16106749] Berri S, et al. Characterization of WRKY co-regulatory networks in rice and Arabidopsis. BMC Plant Biol., 2009. 9: p. 120 [PMID:19772648] Delteil A, et al. Building a mutant resource for the study of disease resistance in rice reveals the pivotal role of several genes involved in defence. Mol. Plant Pathol., 2012. 13(1): p. 72-82 [PMID:21726398] Peng Y,Bartley LE,Canlas P,Ronald PC OsWRKY IIa Transcription Factors Modulate Rice Innate Immunity. Rice (N Y), 2010. 3(1): p. 36-42 [PMID:21961049] Chujo T, et al. OsWRKY28, a PAMP-responsive transrepressor, negatively regulates innate immune responses in rice against rice blast fungus. Plant Mol. Biol., 2013. 82(1-2): p. 23-37 [PMID:23462973] Yazawa T,Kawahigashi H,Matsumoto T,Mizuno H Simultaneous transcriptome analysis of Sorghum and Bipolaris sorghicola by using RNA-seq in combination with de novo transcriptome assembly. PLoS ONE, 2013. 8(4): p. e62460 [PMID:23638091]