PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00266.1.g00290.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 750aa    MW: 83600.2 Da    PI: 8.4352
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00266.1.g00290.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.31.3e-161461148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  rg+WT+eEd +lv  ++++G  +W++ +r  g+ R++k+c++rw +yl
  Zpz_sc00266.1.g00290.1.am.mk 14 RGPWTPEEDRILVAHIERHGHSNWRALPRLAGLLRCGKSCRLRWINYL 61
                                  89******************************99************97 PP
2Myb_DNA-binding51.81.9e-1667112148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   rg++T eE+e +++++++lG++ W++Ia++++ gRt++++k+ w+++l
  Zpz_sc00266.1.g00290.1.am.mk  67 RGNFTREEEEAIIQLHNMLGNR-WSAIAARLP-GRTDNEIKNVWHTHL 112
                                   89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.6E-24564IPR009057Homeodomain-like
PROSITE profilePS5129416.247961IPR017930Myb domain
SuperFamilySSF466894.87E-3010108IPR009057Homeodomain-like
SMARTSM007179.7E-141363IPR001005SANT/Myb domain
PfamPF002493.1E-141461IPR001005SANT/Myb domain
CDDcd001679.31E-111661No hitNo description
PROSITE profilePS5129426.01462116IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.7E-2665116IPR009057Homeodomain-like
SMARTSM007171.7E-1566114IPR001005SANT/Myb domain
PfamPF002494.7E-1567112IPR001005SANT/Myb domain
CDDcd001673.26E-1169112No hitNo description
SuperFamilySSF571968.37E-5359405No hitNo description
Gene3DG3DSA:2.10.25.101.6E-8361405No hitNo description
PROSITE profilePS5002612.798361405IPR000742EGF-like domain
SMARTSM001791.6E-6361405IPR001881EGF-like calcium-binding domain
CDDcd000541.18E-7361405No hitNo description
PROSITE patternPS011870361389IPR018097EGF-like calcium-binding, conserved site
PROSITE patternPS000100380391IPR000152EGF-type aspartate/asparagine hydroxylation site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005509Molecular Functioncalcium ion binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 750 aa     Download sequence    Send to blast
MGRAPCCEKM GLKRGPWTPE EDRILVAHIE RHGHSNWRAL PRLAGLLRCG KSCRLRWINY  60
LRPDIKRGNF TREEEEAIIQ LHNMLGNRWS AIAARLPGRT DNEIKNVWHT HLKKRLEPKA  120
PNAAAPKRRA KKQQQPNQVV VLDGPTTAPV SPEQSLSTAS QSAATTTDCS AASSSLENAD  180
SFTSEEFMID DSFWAETLAM STVVDSAESS MDDGFGASSG DDTDFWLNVF MQAGGVETYL  240
PRAQGGLSLV SPFYLALPGG QPTFISARHW RFSCGFEKSS WHTTLIHQTP GASRCLAERP  300
PDAPTRVQLD PEDRSPCKYC CLAASLLKSF SPPVGIVRLR PCKRPRESKS DDSWIDRRPA  360
NINECEDKRF KYPCSVPGTC INTIGGYDCQ CPHKTTGNAY NGTCQHWRCC PDHHGVLPLH  420
DPREKEARQD QKRVFQTARR LPALRGDEEI LDAQVKREQS LELLEQVAEL AKRCLEMAGD  480
KRPSMRQVAE ELDRLSRVAQ QPFGRHSSEE MLALLGGSPS TASEVELTTT YRDASFTDTA  540
YIGIRDGCSD ERFPGIPATM TLRLRSAREN LRACRHRGEA HRSPLGLDGV VSHQCGLRRV  600
QGWLIGLIPA ACEASGSLGP RPVTPIVSLE EEIEQFASKG THARTKCPRP SLSQLLGCIA  660
QPPSGLMLTL EQKQLLDRKI LLRRPMRVWN SSCNMILYCA SSTAAAWYCT LTEISEKNKE  720
SRVKWGRILI LPISYSLFVR AEIVTPRLPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-26121175109B-MYB
1h8a_C1e-251211625128MYB TRANSFORMING PROTEIN
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00266.1.g00290.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9734711e-126EU973471.1 Zea mays clone 399373 myb-related protein Myb4 mRNA, complete cds.
GenBankKJ7281901e-126KJ728190.1 Zea mays clone pUT6464 MYB transcription factor (MYB41) mRNA, partial cds.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.11e-71myb domain protein 15