PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00263.1.g00060.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 262aa    MW: 29193.2 Da    PI: 7.1189
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00263.1.g00060.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.00076587323
                                    ET..TTTEEESSHHHHHHHHHHT CS
                         zf-C2H2  3 Cp..dCgksFsrksnLkrHirtH 23
                                    C+   Cgk F +   L++H  +H
  Zpz_sc00263.1.g00060.1.sm.mkhc 65 CSyeGCGKIFIDAGALRKHAHVH 87
                                    77779**************9887 PP
2zf-C2H216.91.8e-05136161123
                                     EEET..TTTEEESSHHHHHHHHHH.T CS
                         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                                     y+Cp   C+k + + + L+ H+r+ H
  Zpz_sc00263.1.g00060.1.sm.mkhc 136 YVCPydGCDKAYIHEYKLNLHLRKeH 161
                                     9***********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.7E-135989IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00796387IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.3886392IPR007087Zinc finger, C2H2
SuperFamilySSF576672.25E-66488No hitNo description
PROSITE patternPS0002806587IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.9E-490102IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene3DG3DSA:3.30.160.601.2E-9129159IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.12E-6131159No hitNo description
SMARTSM003550.0018136161IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.39136166IPR007087Zinc finger, C2H2
PROSITE patternPS000280138161IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MQAAAHRRHR WVKEWVPQDL VVAGGPCALY KWVREDRLAA LKGKDKEQGT EAAKSEPNTE  60
VLFLCSYEGC GKIFIDAGAL RKHAHVHGER QYICHYENCG KNQGAPTVNH NPPAHHHHKP  120
VKSSATPPVP SADRPYVCPY DGCDKAYIHE YKLNLHLRKE HPNHDQDAGV QAAASSKGTA  180
SKNSRRSKPN ITTKMPPSKI PRHAGGYATP PPAISAPGEH RWPRQASYED DSEETEEEGD  240
NAEDGWRYRG ASSDDEKTED EE
Functional Description ? help Back to Top
Source Description
UniProtDual-function transcription factor with both repression and activation activities. Binds to 5'-CCATATT-3' motif in target gene promoters (e.g. ABR1) (PubMed:26961720). Binds also to G-rich DNA motif 5'-GGGGGCAGTGG-3' (PubMed:22508367). Regulates the expression of genes involved in diverse cellular pathways, including glucose metabolism, photosynthesis, phototropism and stress response (e.g. salt, drought and osmotic stress) (PubMed:22508367, PubMed:26961720). Regulates plant immunity, especially during necrotrophic fungal infection (e.g. B.cinerea) (PubMed:24451981). Binds to ABR1 promoter and promotes its expression, thus negatively regulating the abscisic acid (ABA) signaling pathway. Represses ABA- and salt-responsive genes expression (PubMed:26961720). {ECO:0000269|PubMed:22508367, ECO:0000269|PubMed:24451981, ECO:0000269|PubMed:26961720}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00263.1.g00060.1.sm.mkhc
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in an ABI1- and ABI4-dependent manner. Stimulated by stress conditions including high salt, osmotic stress (e.g. mannitol) and dehydration. May be induced by ABI4 but repressed by ABR1. Repressed by darkness but induced by light. {ECO:0000269|PubMed:26961720}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021316183.11e-105zinc finger transcription factor YY1 isoform X2
SwissprotQ2V3L33e-54YY1_ARATH; Zinc finger transcription factor YY1
TrEMBLA0A1D6HAB11e-114A0A1D6HAB1_MAIZE; WREBP-2 protein
STRINGSb04g022470.11e-104(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20943899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.13e-48C2H2 family protein
Publications ? help Back to Top
  1. Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
    The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
    DNA Res., 2001. 8(6): p. 285-90
    [PMID:11853315]
  2. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]
  3. Wu XY,Li T
    A Casein Kinase II Phosphorylation Site in AtYY1 Affects Its Activity, Stability, and Function in the ABA Response.
    Front Plant Sci, 2017. 8: p. 323
    [PMID:28348572]