PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00237.1.g00080.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 281aa    MW: 30507.5 Da    PI: 4.5549
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00237.1.g00080.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.61.3e-1776126155
                           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                   s+y+GVr+++  g+W+Ae+rdp+    +  r++lg+f tae Aa+a++ a++ l+g
  Zpz_sc00237.1.g00080.1.am.mk  76 SQYHGVRRRP-LGKWAAEVRDPV----KgVRVWLGTFPTAEAAARAYDDAARDLRG 126
                                   78********.8*********75....44************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.35E-1676136No hitNo description
SuperFamilySSF541718.5E-2176136IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.8E-3077135IPR001471AP2/ERF domain
PfamPF008473.2E-1177126IPR001471AP2/ERF domain
SMARTSM003801.0E-3177140IPR001471AP2/ERF domain
PROSITE profilePS5103223.03777134IPR001471AP2/ERF domain
PRINTSPR003671.2E-87889IPR001471AP2/ERF domain
PRINTSPR003671.2E-8100116IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MCGGAILAEL IPSEPERRVT PGTLCPGKSS HDDDFEAAFR EFNDEDEDDE RPFGFGAGGA  60
SAVGSKRERR RRRTPSQYHG VRRRPLGKWA AEVRDPVKGV RVWLGTFPTA EAAARAYDDA  120
ARDLRGAAAK LNFPASSVAA KVRAGKRRAA ADTAAAYVAH LGDERDIPLT AQNDASGCSG  180
ALPDFSWQGM SASDNGATRP VDLDDIELCS GPKRLRSEAE ETEASPAATE DLLFDPFVFG  240
EQLSFFHGGA YEQPEEQRGE SMGLWGFDDD RLVDETPVCY Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-18771341472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16873RRRRRT
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00237.1.g00080.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0876888e-65BT087688.1 Zea mays full-length cDNA clone ZM_BFb0158A18 mRNA, complete cds.
GenBankJX4699188e-65JX469918.1 Zea mays subsp. mays clone UT3174 AP2-EREBP-type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797880.11e-65ethylene-responsive transcription factor ERF073-like
TrEMBLA0A2T8I6493e-64A0A2T8I649_9POAL; Uncharacterized protein
STRINGPavir.Ia04158.1.p9e-64(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43712654
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.16e-16ERF family protein