PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00236.1.g00360.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 229aa MW: 24797.1 Da PI: 8.7708 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.1 | 1.5e-18 | 69 | 123 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq Le+ F+++++++ ++++ LAk+l+L rqV vWFqNrRa+ k Zpz_sc00236.1.g00360.1.sm.mk 69 RKKLRLTKEQSALLEDRFKEHSTLNPKQKAALAKQLNLRPRQVEVWFQNRRARTK 123 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 125.6 | 2.2e-40 | 69 | 158 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLe 81 +kk+rl+keq++lLE+ F+e+++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ Zpz_sc00236.1.g00360.1.sm.mk 69 RKKLRLTKEQSALLEDRFKEHSTLNPKQKAALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTEENRRLQ 149 69******************************************************************************* PP HD-ZIP_I/II 82 keveeLreel 91 +e +eLr +l Zpz_sc00236.1.g00360.1.sm.mk 150 RELQELR-AL 158 ******9.55 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 6.27E-19 | 62 | 126 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.232 | 65 | 125 | IPR001356 | Homeobox domain |
SMART | SM00389 | 9.6E-16 | 67 | 129 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 6.8E-16 | 69 | 123 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 6.2E-18 | 69 | 123 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.17E-15 | 69 | 126 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 100 | 123 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 1.1E-23 | 125 | 168 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 1.7E-10 | 125 | 159 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MAREDVHLSD AGLALGLSLG GGGASLPDEA TPATALSVKR ERAEEAEAER ASSTARGAGA 60 EDDDDGTTRK KLRLTKEQSA LLEDRFKEHS TLNPKQKAAL AKQLNLRPRQ VEVWFQNRRA 120 RTKLKQTEVD CEFLKRCCET LTEENRRLQR ELQELRALKL AAPAGAPPSP AVPFYMQLPA 180 ATLSVCPSCD RLGGPAAAKA ADVDRPMGRT ATHHFFNPFA RSALPASAG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 67 | 73 | TRKKLRL |
2 | 117 | 125 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00236.1.g00360.1.sm.mk |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}. | |||||
UniProt | INDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP097788 | 1e-130 | FP097788.1 Phyllostachys edulis cDNA clone: bphylf059k15, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015627844.1 | 2e-94 | homeobox-leucine zipper protein HOX19 isoform X2 | ||||
Swissprot | A2XE76 | 2e-95 | HOX19_ORYSI; Homeobox-leucine zipper protein HOX19 | ||||
Swissprot | Q8GRL4 | 2e-95 | HOX19_ORYSJ; Homeobox-leucine zipper protein HOX19 | ||||
TrEMBL | A0A3L6TSB8 | 1e-94 | A0A3L6TSB8_PANMI; Homeobox-leucine zipper protein HOX19 isoform X2 | ||||
TrEMBL | A0A453ILB1 | 1e-94 | A0A453ILB1_AEGTS; Uncharacterized protein | ||||
STRING | OGLUM03G09500.1 | 9e-94 | (Oryza glumipatula) | ||||
STRING | ORUFI03G09550.1 | 9e-94 | (Oryza rufipogon) | ||||
STRING | ONIVA02G39180.1 | 9e-94 | (Oryza nivara) | ||||
STRING | Traes_4BL_78DD63002.1 | 8e-94 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2055 | 36 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37790.1 | 3e-49 | HD-ZIP family protein |