PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00235.1.g00030.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 512aa    MW: 55572.9 Da    PI: 9.6454
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00235.1.g00030.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.78.3e-161461148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  +g+WT+eEd++lv     +G  +W++I++  g+ R++k+c++rw +yl
  Zpz_sc00235.1.g00030.1.am.mk 14 KGPWTAEEDQKLVVFLLSHGHCCWRLIPKLAGLLRCGKSCRLRWTNYL 61
                                  79******************************99************97 PP
2Myb_DNA-binding48.42.1e-1570131447
                                   S-HHHHHHHHHHHHHTTTT...................-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   4 WTteEdellvdavkqlGgg...................tWktIartmgkgRtlkqcksrwqky 47 
                                    + eE+ l +d+++qlG++                   +W++Ia++++ gRt++++k++w+++
  Zpz_sc00235.1.g00030.1.am.mk  70 LSDEEEALVIDLHAQLGNRslagrwlvppkltaplvfcRWSKIAARLP-GRTDNEIKNHWNTH 131
                                   589*********************************************.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-20562IPR009057Homeodomain-like
PROSITE profilePS5129421.017965IPR017930Myb domain
SMARTSM007171.2E-121363IPR001005SANT/Myb domain
PfamPF002493.9E-141461IPR001005SANT/Myb domain
SuperFamilySSF466892.6E-221465IPR009057Homeodomain-like
CDDcd001673.40E-101661No hitNo description
Gene3DG3DSA:1.10.10.605.2E-2263136IPR009057Homeodomain-like
PROSITE profilePS5129414.60766136IPR017930Myb domain
SMARTSM007176.9E-1166134IPR001005SANT/Myb domain
PfamPF002492.0E-1270131IPR001005SANT/Myb domain
CDDcd001671.09E-971132No hitNo description
SuperFamilySSF466892.6E-22105133IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    Send to blast
MGRQPCCEKV GLKKGPWTAE EDQKLVVFLL SHGHCCWRLI PKLAGLLRCG KSCRLRWTNY  60
LRPDLKRGLL SDEEEALVID LHAQLGNRSL AGRWLVPPKL TAPLVFCRWS KIAARLPGRT  120
DNEIKNHWNT HIKKKLRKMG IDPVTHRPLS PSQSGEPLSQ QRQQRQDPPH EREEGRDEPK  180
ASSEGPAGSD QDDESEETPV SGAQPQVAAA SSPASTAATV SPSCSSSGSA SVATPGADVA  240
AWPDPIDLFE VDGMMDLDWA AILSGCGDDG AGMNVDLFDH YPGDGFDEQV WSMHGLRRGE  300
KPVPVVARSI TGVVVEPAAH EEVDLVRSPA SAGNTTPELT RRDPIGQTAG QGRDLWRKLR  360
APPVPSTSAN KGMPRHLLVA TLVLARTSRR LVFSFVPFPR RGVTSASRHG CVTSFTRACT  420
HDDTARDAAA AETEPVARPS RPGTPSSGER SRARISGPWR KGFHSSLSPG ATRHGWKPKR  480
VLSGGVRCFH ASPRLPSFVG RCGWRGPAPR HA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-24121365108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00235.1.g00030.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9646201e-100EU964620.1 Zea mays clone 280394 odorant 1 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953828.11e-131protein ODORANT1
TrEMBLA0A3L6RR411e-131A0A3L6RR41_PANMI; Protein ODORANT1-like
STRINGSi020225m1e-130(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66230.15e-76myb domain protein 20