PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zpz_sc00232.1.g00450.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 196aa MW: 22219.1 Da PI: 10.9387 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.9 | 5.9e-19 | 90 | 140 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++y+G+r+++ +g+W+AeIrdp++ r++lg+f taeeAa+a++ +++++g Zpz_sc00232.1.g00450.1.am.mk 90 TQYRGIRRRP-WGKWAAEIRDPRK---GVRVWLGTFSTAEEAARAYDVEARRIRG 140 58********.**********954...4**********************99997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.27E-28 | 90 | 150 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 7.1E-32 | 91 | 149 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.22E-22 | 91 | 149 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 7.2E-12 | 91 | 140 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.4E-37 | 91 | 154 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.408 | 91 | 148 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.9E-12 | 92 | 103 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.9E-12 | 114 | 130 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009873 | Biological Process | ethylene-activated signaling pathway | ||||
GO:0034059 | Biological Process | response to anoxia | ||||
GO:0071456 | Biological Process | cellular response to hypoxia | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 196 aa Download sequence Send to blast |
MCGGAILGDL YSRTVTAGDL WADSGSRESG KSRKGKKNSW EFRAGDSSDF EADFDEFQDG 60 DNEEEVDFVY GNQEVLRKSS KFGSRKRKKT QYRGIRRRPW GKWAAEIRDP RKGVRVWLGT 120 FSTAEEAARA YDVEARRIRG IKAKVNFPDT VPASKRRRRP GHVAARAAKK SNSALKQLEH 180 FIMRPVRLVS FLAAMT |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 9e-21 | 91 | 148 | 14 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 84 | 88 | RKRKK |
2 | 84 | 98 | RKRKKTQYRGIRRRP |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00230 | DAP | Transfer from AT1G72360 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Zpz_sc00232.1.g00450.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002463183.1 | 2e-58 | ethylene-responsive transcription factor ERF073 | ||||
Refseq | XP_021308253.1 | 2e-58 | ethylene-responsive transcription factor ERF073 | ||||
TrEMBL | A0A1E5WNS8 | 1e-63 | A0A1E5WNS8_9POAL; Ethylene-responsive transcription factor 1 | ||||
STRING | Pavir.Ba00410.1.p | 2e-61 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14560 | 21 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G72360.1 | 9e-32 | ERF family protein |