PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00228.1.g00240.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 209aa    MW: 22676.8 Da    PI: 5.0877
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00228.1.g00240.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.14.9e-30111169159
                                   ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                   ldDg++WrKYG+K vk++++pr+YYrC+  gC vkk+ver+++dp+++++tY g Hnh+
  Zpz_sc00228.1.g00240.1.sm.mk 111 LDDGFKWRKYGKKAVKNNPNPRNYYRCSEDGCGVKKRVERDRDDPRYIITTYDGVHNHT 169
                                   59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.5E-3299171IPR003657WRKY domain
SuperFamilySSF1182901.83E-27103171IPR003657WRKY domain
PROSITE profilePS5081131.525106171IPR003657WRKY domain
SMARTSM007744.7E-34111170IPR003657WRKY domain
PfamPF031063.3E-24112168IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0050832Biological Processdefense response to fungus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MAASLGLNPE AAFFNPCSAY SASSPFMTTA DFAASFPASE PDDAAARAFF AELDDDCRLF  60
DFGYSPAASV FADDGDGDDH NEKKMRYADD EKGPRVNGRI GFRTRSEVEI LDDGFKWRKY  120
GKKAVKNNPN PRNYYRCSED GCGVKKRVER DRDDPRYIIT TYDGVHNHTS PAAAVVQYSG  180
GAGAPSFYSP PHSGSPAAAA SYSSGSLLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-2897172378Probable WRKY transcription factor 4
2lex_A2e-2897172378Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00531DAPTransfer from AT5G26170Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00228.1.g00240.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9600542e-80EU960054.1 Zea mays clone 221474 WRKY67 - superfamily of TFs having WRKY and zinc finger domains mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002440727.17e-79probable WRKY transcription factor 50
TrEMBLA0A1E5VP701e-77A0A1E5VP70_9POAL; Putative WRKY transcription factor 50
TrEMBLC5YU852e-77C5YU85_SORBI; Uncharacterized protein
STRINGSb09g005700.13e-78(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44137206
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.18e-42WRKY DNA-binding protein 50