PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00222.1.g00070.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 250aa    MW: 27419.2 Da    PI: 9.1762
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00222.1.g00070.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.49.4e-151461148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  rg W++eEde+l++++  +G g+W+ ++++ g  R +k+c++rw +yl
  Zpz_sc00222.1.g00070.1.am.mk 14 RGLWSPEEDEKLIRYISTHGYGCWSEVPEKAGHQRYRKSCRLRWINYL 61
                                  788*****************************88************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-22664IPR009057Homeodomain-like
PROSITE profilePS5129421.863965IPR017930Myb domain
SMARTSM007171.7E-101363IPR001005SANT/Myb domain
PfamPF002492.8E-141461IPR001005SANT/Myb domain
SuperFamilySSF466895.7E-191688IPR009057Homeodomain-like
CDDcd001672.24E-111761No hitNo description
PROSITE profilePS500904.01962125IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.9E-765129IPR009057Homeodomain-like
SMARTSM007179.566127IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MGHHSCCNEQ KVKRGLWSPE EDEKLIRYIS THGYGCWSEV PEKAGHQRYR KSCRLRWINY  60
LGPDIRRGRL SAEEEKLIIS LHAIVGNRCL SSLRPAGGPT SPAISPAGLI TRLRTSNKNY  120
WNSWIKKKIR EPASTTSSSV SLPCSTVTAA SDTAHGHLQT LPFSVADQQL DAIISQGLAL  180
PSSKLAAGQD SPPTEPLPPP HCPFFMFDTN VSLPSSLSPA AATQLQHPSL TFTTAAMTCR  240
ATSCLRWWTA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-14141297108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates lignified secondary cell wall thickening of the anther endocethium, which is necessary for anther dehiscence (PubMed:12753590, PubMed:17147638, PubMed:17329564). May play a role in specifying early endothecial cell development by regulating a number of genes linked to secondary thickening such as NST1 and NST2. Acts upstream of the lignin biosynthesis pathway (PubMed:17329564). {ECO:0000269|PubMed:12753590, ECO:0000269|PubMed:17147638, ECO:0000269|PubMed:17329564}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00222.1.g00070.1.am.mk
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by auxin. {ECO:0000269|PubMed:23410518}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0949882e-80FP094988.1 Phyllostachys edulis cDNA clone: bphylf028j02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822193.15e-98myb-related protein 308
SwissprotQ9SPG36e-42MYB26_ARATH; Transcription factor MYB26
TrEMBLA0A2T7D3G12e-99A0A2T7D3G1_9POAL; Uncharacterized protein
STRINGPavir.Fb00364.1.p8e-92(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60323757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63910.14e-61myb domain protein 103
Publications ? help Back to Top
  1. Coego A, et al.
    The TRANSPLANTA collection of Arabidopsis lines: a resource for functional analysis of transcription factors based on their conditional overexpression.
    Plant J., 2014. 77(6): p. 944-53
    [PMID:24456507]
  2. Yang C, et al.
    Transcription Factor MYB26 Is Key to Spatial Specificity in Anther Secondary Thickening Formation.
    Plant Physiol., 2017. 175(1): p. 333-350
    [PMID:28724622]
  3. Ghelli R, et al.
    A Newly Identified Flower-Specific Splice Variant of AUXIN RESPONSE FACTOR8 Regulates Stamen Elongation and Endothecium Lignification in Arabidopsis.
    Plant Cell, 2018. 30(3): p. 620-637
    [PMID:29514943]