PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00209.1.g00340.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 369aa    MW: 40800.6 Da    PI: 6.0909
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00209.1.g00340.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding461.2e-14153196447
                                   S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                   W+teE+ +++++ + +G g+Wk Iar++ k+Rt+ q+ s+ qky
  Zpz_sc00209.1.g00340.1.am.mk 153 WSTEEHRQFLRGLRVYGRGDWKNIARHFVKTRTAVQVSSHAQKY 196
                                   *******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.912145201IPR017930Myb domain
SuperFamilySSF466893.59E-16146201IPR009057Homeodomain-like
TIGRFAMsTIGR015578.8E-13149199IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.606.8E-11149198IPR009057Homeodomain-like
SMARTSM007174.4E-12149199IPR001005SANT/Myb domain
PfamPF002491.1E-10153196IPR001005SANT/Myb domain
CDDcd001671.73E-10153196No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MAMAAAADMG PLFTGDWSAS DDVATVKYLI VMHTNNAIIS DGIAGTLNSK HKNIVDILHK  60
QFHWNDRRQV TDLYFDVVVE MLQGPEMMAT GGIDLVNDNF GVMPLPLQLP VVEDPVMDNM  120
DVLLGPVNVV DTTRARRQPP RYPWAVRNKG RFWSTEEHRQ FLRGLRVYGR GDWKNIARHF  180
VKTRTAVQVS SHAQKYYRRQ ESGAARQRYS INDVGLYDAE PWAAPTNNSS GSWETLSFAS  240
GDYNNSNGYI AFGQQAPAQP APTMNNPASA MNNTAPAMNN TAPAMNYHAL AMNNPTPAMN  300
NNPAPVWSPF QYNAGEASTG QAAWTTGDQQ MGYATAAPPP AMEETGSFLS SGDQQGFFAT  360
QLWMNNMYY
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00209.1.g00340.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84230133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.14e-23Homeodomain-like transcriptional regulator