PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00175.1.g00210.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | WRKY | ||||||||
Protein Properties | Length: 646aa MW: 69599.1 Da PI: 8.6753 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 102.3 | 2.7e-32 | 330 | 387 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 dDgynWrKYGqK++kgse+prsYY+Ct+++Cp+kkk+ers d++v+ei+Y+g+Hnh+k Zpz_sc00175.1.g00210.1.am.mk 330 DDGYNWRKYGQKQMKGSENPRSYYKCTFPDCPTKKKMERSP-DGQVTEIVYKGTHNHPK 387 8****************************************.***************85 PP | |||||||
2 | WRKY | 100.6 | 9.1e-32 | 494 | 552 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct agCpv+k+ver+ +d ++v++tYe +Hnh+ Zpz_sc00175.1.g00210.1.am.mk 494 LDDGYRWRKYGQKVVKGNPNPRSYYKCTAAGCPVRKHVERACHDARAVITTYEAKHNHD 552 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.6E-27 | 321 | 388 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.88E-24 | 326 | 388 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.5E-33 | 329 | 387 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.8E-24 | 330 | 386 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 22.997 | 330 | 388 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.1E-35 | 479 | 554 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.88E-28 | 486 | 554 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 37.849 | 489 | 554 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.8E-36 | 494 | 553 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.3E-24 | 495 | 552 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 646 aa Download sequence Send to blast |
MIVTTTLTNR ASNPIHGEER STKRFAAATP SAHRTRTRSG TGHCFDAHVS GLPRSHWRVA 60 VGSGVVFRAP ITFDRSTVRD SNVYKRGWES CRRDTPRPAL RRPVLPARYS PAMSVSPPSH 120 MTSAPASLGA AVANSGPVAL SFASNSFGGG SSFLAGGSRF KYMAPVSLLP ASPSSRFNAA 180 AAGGFLDSPI LLTPSLFPSP TTGAFPSEPF NWMGPPAENL PEVVKEEQRQ CFDFTFQTTA 240 AVPVTTTGAA QAESFSQSSM TMAPLGAEGD SYNGEPWSFQ QERAMDFNAP FEAPSSGVTT 300 AVTQPADMLR NSGYNAPPCF REQQSRRSSD DGYNWRKYGQ KQMKGSENPR SYYKCTFPDC 360 PTKKKMERSP DGQVTEIVYK GTHNHPKPQG TRRGAASAAS YVLGSANDEH SFGALSGTPV 420 ATPENSSGSF GDDEINGVSS RLIGTDQLLH ADDEPDSKKC RRDGSEGEAL SVAGNRRVRE 480 PRVVVQTMSD IDVLDDGYRW RKYGQKVVKG NPNPRSYYKC TAAGCPVRKH VERACHDARA 540 VITTYEAKHN HDVPPARGSY RAGLTALQPA ASYHQGAGVF VGASSHGAPM QAAESGGFAL 600 SGFGNTMGAS YPYTTSQQCD ATYYTSGTKD EPRDDDLSFF EQQLLF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-33 | 330 | 554 | 8 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 2e-33 | 330 | 554 | 8 | 77 | Probable WRKY transcription factor 4 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator (PubMed:26025535). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:19199048, PubMed:26025535). Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (PubMed:15618416, PubMed:19199048, PubMed:26025535). {ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048, ECO:0000269|PubMed:26025535}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00175.1.g00210.1.am.mk |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:15618416, PubMed:19199048). Slightly down-regulated by gibberellic acid (GA) (PubMed:15618416). Accumulates in response to jasmonic acid (MeJA) (By similarity). {ECO:0000250|UniProtKB:Q6B6R4, ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ298184 | 1e-101 | DQ298184.1 Oryza sativa (japonica cultivar-group) WRKY transcription factor 70 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004961763.1 | 0.0 | WRKY transcription factor WRKY24 | ||||
Swissprot | Q6IEQ7 | 1e-138 | WRK24_ORYSJ; WRKY transcription factor WRKY24 | ||||
TrEMBL | A0A1E5UYK5 | 0.0 | A0A1E5UYK5_9POAL; Putative WRKY transcription factor 33 | ||||
STRING | Si021634m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2992 | 36 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38470.1 | 3e-92 | WRKY DNA-binding protein 33 |
Publications ? help Back to Top | |||
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