PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00169.1.g00350.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family SBP
Protein Properties Length: 385aa    MW: 42114.7 Da    PI: 7.906
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00169.1.g00350.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP1291.8e-40162240178
                                   --SSTT-----TT--HHHHHTT--HHHHT-S-EE.ETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                           SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvl.vsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                                   +Cq+egC+adls+ak+yhrrhkvCe+hskapvv+ + gl+qrfCqqCsrfh l+efD++k+sCr+rLa+hn+rrrk+++
  Zpz_sc00169.1.g00350.1.am.mk 162 RCQAEGCKADLSSAKRYHRRHKVCEHHSKAPVVItAGGLHQRFCQQCSRFHLLDEFDDAKKSCRKRLADHNRRRRKSKP 240
                                   6******************************99835679*************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.109.7E-34157225IPR004333Transcription factor, SBP-box
PROSITE profilePS5114130.274160238IPR004333Transcription factor, SBP-box
SuperFamilySSF1036125.49E-37161241IPR004333Transcription factor, SBP-box
PfamPF031107.3E-31163237IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009554Biological Processmegasporogenesis
GO:0009556Biological Processmicrosporogenesis
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MMNIPAAGNS CDEFPYVSPS PPPPSLLPIM EQESSIQREQ LGYNLEANSL ALLPPSNAAA  60
AHQTTIAGHG AHDILQFYPA ASSHYLAGGG NPYGHHFGGS AYQSYYQQAA QAAAPEYYFP  120
TLVSSAEENM ASFAATQLGL NLGYRTYFPP RGGYTYGHHP PRCQAEGCKA DLSSAKRYHR  180
RHKVCEHHSK APVVITAGGL HQRFCQQCSR FHLLDEFDDA KKSCRKRLAD HNRRRRKSKP  240
SDADAADKKR AQANKAAASK DKAGSSSRNN MDTGDGLTTQ ILGSALFSKE QDQGMDLGEV  300
VKEAVDPKGK ASMQQQHANH HGMNHHGFPF PTSSGSCFPQ SQAVASDNTS NIAQLQEPSL  360
AFHQHHQQSN ILQLRQAMFD MDFDH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-271632371184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1232249RRRRKSKPSDADAADKKR
2233238RRRKSK
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the formation of ligules and auricles during leaf organogenesis.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00090SELEXTransfer from AT1G02065Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00169.1.g00350.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankZMU894960.0U89496.1 Zea mays liguleless1 protein (liguleless1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824698.10.0protein LIGULELESS 1-like
SwissprotO040030.0LG1_MAIZE; Protein LIGULELESS 1
TrEMBLA0A3L6Q0D90.0A0A3L6Q0D9_PANMI; Protein LIGULELESS 1-like
STRINGSi022315m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69903452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.11e-41squamosa promoter binding protein-like 8
Publications ? help Back to Top
  1. Sylvester AW,Cande WZ,Freeling M
    Division and differentiation during normal and liguleless-1 maize leaf development.
    Development, 1990. 110(3): p. 985-1000
    [PMID:2088734]