PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00165.1.g00180.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | ERF | ||||||||
Protein Properties | Length: 310aa MW: 33791.8 Da PI: 7.8814 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57 | 4.9e-18 | 41 | 92 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr++ grWv+e+r+p +k+ r++lg+f tae Aa+a++ a+++l+g Zpz_sc00165.1.g00180.1.am.mk 41 PVYRGVRRRGPAGRWVCEVREP---NKKSRIWLGTFATAEAAARAHDVAALALRG 92 68****************9998...347*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.5E-13 | 41 | 92 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-26 | 42 | 106 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.4E-20 | 42 | 102 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.1E-30 | 42 | 102 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.392 | 42 | 100 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-5 | 43 | 54 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.25E-13 | 43 | 102 | No hit | No description |
PRINTS | PR00367 | 1.9E-5 | 66 | 82 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 310 aa Download sequence Send to blast |
MEYVDVMGYD EQVAEGEYAT VMSAPPKRPA GRTKFRETRH PVYRGVRRRG PAGRWVCEVR 60 EPNKKSRIWL GTFATAEAAA RAHDVAALAL RGRSACLNFA DSARLLRVDP ATLATPEDIR 120 RAAIELAEAS SQQDAAAAVA SSSGAVVDTA ATLPTMTHHQ AEAVPYDYDM YRNMDFDQSY 180 YYDPMGGAGG SCDWQTTNWH MDGDDDGSGA AGCGGSDGTS THRQHKFQDR AHVRVATAHF 240 GSDCCCELKI PFGCGGTDAL FALAARLLTN RPSCTPACFF ERSCSRAAAW SRWVTVAAKW 300 ARSRPRRLVP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-13 | 40 | 99 | 12 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}. | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00165.1.g00180.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY785898 | 1e-118 | AY785898.1 Sorghum bicolor SbCBF5 (CBF5) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004964394.1 | 2e-69 | dehydration-responsive element-binding protein 1C | ||||
Swissprot | A2Y8S6 | 3e-64 | DRE1C_ORYSI; Dehydration-responsive element-binding protein 1C | ||||
Swissprot | Q9LWV3 | 3e-64 | DRE1C_ORYSJ; Dehydration-responsive element-binding protein 1C | ||||
TrEMBL | A0A1E5W5R3 | 3e-82 | A0A1E5W5R3_9POAL; Peroxisomal membrane protein 11-5 | ||||
STRING | OPUNC06G01430.1 | 4e-72 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP196 | 36 | 261 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25480.1 | 4e-35 | dehydration response element B1A |
Publications ? help Back to Top | |||
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