PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00165.1.g00020.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRF
Protein Properties Length: 374aa    MW: 40752.4 Da    PI: 8.8488
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00165.1.g00020.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC77.21.6e-2492136145
                             WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                                     d+ep+rCrRtDGKkWRCs+++ +++k+CErH+hrgr+rsrk++e+
  Zpz_sc00165.1.g00020.1.sm.mkhc  92 DPEPWRCRRTDGKKWRCSKEAHPDSKYCERHMHRGRNRSRKPVES 136
                                     79****************************************986 PP
2QLQ61.71.9e-212256236
                             QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36
                                     FTaaQ+++L++Q+l+yKyL+a++PvPp+Ll++++
  Zpz_sc00165.1.g00020.1.sm.mkhc 22 VFTAAQWAELEQQALIYKYLMAGVPVPPDLLLPVR 56
                                    5********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.5E-112157IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166623.072257IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088809.0E-162356IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166726.34692136IPR014977WRC domain
PfamPF088794.4E-2193135IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MPSSASSAAM GMGGYPPRSA AVFTAAQWAE LEQQALIYKY LMAGVPVPPD LLLPVRPNSA  60
AFSFGPAAAA SSFYHPHHPS LSYYAYYGKK LDPEPWRCRR TDGKKWRCSK EAHPDSKYCE  120
RHMHRGRNRS RKPVESKSAS PAHQSQPQLS TVTTTTRETA PLQPLTVGTK AQSLSLGGTG  180
SSQLHVDASS YGSKFTLGGR ADDVGELSFL SRASGNNRGF TIDSPSDSSW HSLPSNVPPY  240
TLLPKSRDSG LLSGAYNYSN IEPSQELGQV TIASLTQEQE RHSFNGGAGG LMGNARHENQ  300
PLRPFFDECP AARDSWSEMD DARSNRTSFS TTQLSISIPR YLDPSVSVEA QSSIPFYDSS  360
TLIVPVPKIQ TWKC
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00165.1.g00020.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641605.10.0growth-regulating factor 5 isoform X4
SwissprotQ6AWY40.0GRF5_ORYSJ; Growth-regulating factor 5
TrEMBLA0A0A9F0Q10.0A0A0A9F0Q1_ARUDO; Uncharacterized protein
STRINGOPUNC06G01050.11e-177(Oryza punctata)
STRINGORGLA06G0010200.11e-180(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP110462431
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37740.14e-23growth-regulating factor 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]