PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00160.1.g00070.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family TALE
Protein Properties Length: 476aa    MW: 52787.8 Da    PI: 8.5998
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00160.1.g00070.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.89.1e-092923291954
                                     HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                        Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                     Fe   ++yp+  ++  LA+++gL+ +qV++WF N R +
  Zpz_sc00160.1.g00070.1.sm.mkhc 292 FEHflHPYPNDVDKHILARQTGLSRSQVSNWFINARVR 329
                                     554459******************************88 PP
2BELL96.72e-31155223472
                            BELL   4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                                     el+++ka+L s++ eVd+rY++y+eq+++v  sFeavag g+a++Yt+lA +a+SrhFrcL+da+a q+
  Zpz_sc00160.1.g00070.1.sm.mkhc 155 ELERRKARLSSIVAEVDRRYRRYREQMRAVELSFEAVAGAGAAQVYTRLARQAMSRHFRCLRDAVAAQV 223
                                     799***************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005747.4E-5086221IPR006563POX domain
PfamPF075261.6E-3792220IPR006563POX domain
PROSITE profilePS5007111.645270333IPR001356Homeobox domain
SMARTSM003896.0E-9273337IPR001356Homeobox domain
CDDcd000862.39E-11273334No hitNo description
SuperFamilySSF466894.71E-17274341IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-27276340IPR009057Homeodomain-like
PfamPF059202.2E-17290329IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MAVHQPHLLD FSAPPNPTPM EAPPPAFDNA DGLLALPHVD GAEETPWPQA AVSLSLFNYH  60
QQPVTAAVVS VAPPTQLHVP AAPASMQTFF HLRSSRYLGP VQELLGEFCS LGGGDFHAMV  120
EKQRAPAGKW VDDVEALSSG LWGNPSQSST MLLLELERRK ARLSSIVAEV DRRYRRYREQ  180
MRAVELSFEA VAGAGAAQVY TRLARQAMSR HFRCLRDAVA AQVRSLRKAM GDRDASAPAG  240
ATKGDTPRLR VLDQCLRQQR AFQQPAAVEN YPWRPQRGLP QRAVAVLRAW LFEHFLHPYP  300
NDVDKHILAR QTGLSRSQVS NWFINARVRL WKPMIEDMYM EEVNQQNPSD TAAIVKAERS  360
TTTILGEGEI SHQNQQLCSV GNPNNYMISS GGDHMFRDYP TVAQTHGKNH SAASLSLGLQ  420
QQEQQQPFVG SSMMQPQRQR SAGLTLEGLQ GQGPLTERML PYRNLMGSQS LHDLAG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A6e-15279336562Homeobox protein Meis2
3k2a_B6e-15279336562Homeobox protein Meis2
4xrm_A6e-15279336562Homeobox protein Meis2
4xrm_B6e-15279336562Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00160.1.g00070.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004964302.10.0homeobox protein BEL1 homolog
RefseqXP_004964303.10.0homeobox protein BEL1 homolog
TrEMBLK3XWJ50.0K3XWJ5_SETIT; Uncharacterized protein
STRINGSi006303m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63983547
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41410.12e-84TALE family protein