PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00158.1.g00500.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | NAC | ||||||||
Protein Properties | Length: 263aa MW: 29046.2 Da PI: 7.8375 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 139.1 | 2.8e-43 | 4 | 138 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrk 74 lppGfrF Pt+eelv++yL+ k++g++ ++e+vi+ +d++ ++Pw+Lp ++ a+ + w++F++r++++a+g r+ Zpz_sc00158.1.g00500.1.sm.mk 4 LPPGFRFYPTEEELVCFYLRSKLDGRRrDDIERVIPVADVCALDPWQLPGtskvhrCACAGGEPWFYFCRRQEREARGGRP 84 79***********************996667778**************943656553334889****************** PP NAM 75 nratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +r+t sg+Wka g+ v++++g+ +g+kkt+vfy+grap g+kt+W m+eyr+ Zpz_sc00158.1.g00500.1.sm.mk 85 SRTTPSGFWKAAGTPGWVYAADGRPIGTKKTMVFYRGRAPAGTKTKWKMNEYRA 138 ****************************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.68E-49 | 2 | 165 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 47.9 | 4 | 165 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.5E-23 | 5 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 263 aa Download sequence Send to blast |
MAELPPGFRF YPTEEELVCF YLRSKLDGRR RDDIERVIPV ADVCALDPWQ LPGTSKVHRC 60 ACAGGEPWFY FCRRQEREAR GGRPSRTTPS GFWKAAGTPG WVYAADGRPI GTKKTMVFYR 120 GRAPAGTKTK WKMNEYRALE DADAAPPSHA LQIRSEFSLC RLYTESGHPR QFDRRPRAAA 180 AAGGGGENHL IPSSSTAALF TSVEETTGRK RKRSPQNDDT SSSNDGDGGH GHSPQQLSAQ 240 GAGTEDGGLV DGTDDWTEFL DWF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-31 | 4 | 165 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-31 | 4 | 165 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-31 | 4 | 165 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-31 | 4 | 165 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-31 | 4 | 165 | 20 | 168 | NAC domain-containing protein 19 |
3swm_B | 3e-31 | 4 | 165 | 20 | 168 | NAC domain-containing protein 19 |
3swm_C | 3e-31 | 4 | 165 | 20 | 168 | NAC domain-containing protein 19 |
3swm_D | 3e-31 | 4 | 165 | 20 | 168 | NAC domain-containing protein 19 |
3swp_A | 3e-31 | 4 | 165 | 20 | 168 | NAC domain-containing protein 19 |
3swp_B | 3e-31 | 4 | 165 | 20 | 168 | NAC domain-containing protein 19 |
3swp_C | 3e-31 | 4 | 165 | 20 | 168 | NAC domain-containing protein 19 |
3swp_D | 3e-31 | 4 | 165 | 20 | 168 | NAC domain-containing protein 19 |
4dul_A | 2e-31 | 4 | 165 | 17 | 165 | NAC domain-containing protein 19 |
4dul_B | 2e-31 | 4 | 165 | 17 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00158.1.g00500.1.sm.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP093626 | 1e-127 | FP093626.1 Phyllostachys edulis cDNA clone: bphylf060a06, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025809342.1 | 1e-109 | NAC domain-containing protein 90-like | ||||
Swissprot | Q9FMR3 | 1e-64 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | A0A0D9WH20 | 1e-114 | A0A0D9WH20_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR05G14390.1 | 1e-114 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1005 | 38 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 9e-67 | NAC domain containing protein 90 |
Publications ? help Back to Top | |||
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