PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00158.1.g00160.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 405aa    MW: 43569.1 Da    PI: 6.0464
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00158.1.g00160.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.51.9e-19130179255
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                                   +++GVr+++ +g+W+AeIrdp     +  +r++lg+f tae Aa+a+++a+++++g
  Zpz_sc00158.1.g00160.1.am.mk 130 RFRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFETAEAAARAYDEAALRFRG 179
                                   69*******.**********7.....337************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103225.264130187IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-32130188IPR001471AP2/ERF domain
CDDcd000182.92E-19130189No hitNo description
SMARTSM003803.1E-36130193IPR001471AP2/ERF domain
PfamPF008473.0E-13130179IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-22130188IPR016177DNA-binding domain
PRINTSPR003674.6E-11131142IPR001471AP2/ERF domain
PRINTSPR003674.6E-11153169IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MSGGWWWKPA DQEDVDGAAA TAPVLSGEYQ ALEMSTMVSA LAHVVAGGDD DHCDDDPEAM  60
VGGEYAHAPP ALQGGGYYYP DASAPTPDQH FAAAGDQEQS RHDVQGAAAA TMDEHHQSPT  120
PAAEASGGRR FRGVRQRPWG KWAAEIRDPH KAARVWLGTF ETAEAAARAY DEAALRFRGS  180
RAKLNFPEDA RLMPAATTIT AAAATPTAAY PASSAVSEYL RYQMLMPGGG RGSFPQYYAD  240
SGAMSSSSGS YSFPASSVTV ASVPSPAPGY GEAEQWSWPE SGWSYPATTS SWSGSSYYPP  300
PSQYDNWAPE CASHDRWAPH MRVVQSLRWC VAFELRHQLL PQTLPKLERA PCPNSMPEEK  360
EYAPVPPPAA RPGGGRPRGP RQVAAGAQLA RHFHTQVPRP LFRGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-23128187363ATERF1
3gcc_A9e-23128187363ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00158.1.g00160.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0393902e-91BT039390.1 Zea mays full-length cDNA clone ZM_BFc0010H11 mRNA, complete cds.
GenBankJX4699492e-91JX469949.1 Zea mays subsp. mays clone UT3210 AP2-EREBP-type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2T7EDC78e-76A0A2T7EDC7_9POAL; Uncharacterized protein
STRINGPavir.J02402.1.p7e-75(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62322649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.14e-25ethylene response factor 110