PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00151.1.g00340.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 500aa    MW: 54010 Da    PI: 7.5468
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00151.1.g00340.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.99.6e-181461148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  +grWT+eEde l++++k++G g+W++ +++ g+ R++k+c++rw +yl
  Zpz_sc00151.1.g00340.1.am.mk 14 KGRWTKEEDEVLAKYIKEHGEGSWRSLPKKAGLLRCGKSCRLRWINYL 61
                                  79******************************99************97 PP
2Myb_DNA-binding31.15.5e-102522811848
                                   HTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  18 qlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   q  + +W++Ia +++ gRt++++k++w+++l
  Zpz_sc00151.1.g00340.1.am.mk 252 QIDTCQWSLIAGHLP-GRTDNEIKNHWNSHL 281
                                   334449*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.1E-22564IPR009057Homeodomain-like
PROSITE profilePS5129422.81965IPR017930Myb domain
SMARTSM007177.1E-131363IPR001005SANT/Myb domain
PfamPF002491.5E-151461IPR001005SANT/Myb domain
SuperFamilySSF466892.82E-211590IPR009057Homeodomain-like
CDDcd001672.10E-111661No hitNo description
PROSITE profilePS500904.14762115IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.2E-76590IPR009057Homeodomain-like
SMARTSM007171.5E-866283IPR001005SANT/Myb domain
SuperFamilySSF466891.08E-7247283IPR009057Homeodomain-like
CDDcd001672.56E-6250281No hitNo description
PfamPF002492.0E-7255281IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.2E-12257281IPR009057Homeodomain-like
PROSITE profilePS500906.539257281IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MGRAPCCEKV GLKKGRWTKE EDEVLAKYIK EHGEGSWRSL PKKAGLLRCG KSCRLRWINY  60
LRADLKRGNI SEEEEEMILK LHATLGNRYA LRHLSLKLRL GRRPGVTRAR SLSSIDVAGS  120
SAAGYCPATA GGGRQRAREV KGDGRCTAPS ASGIALLGSR ALKRHTPGTR RAAAGVQTPN  180
EAPSLVDHCT WRYGVPGLQE HMGSLSLTAP CMLGSCWGAL RVPSSFFHVR GVLRVIVSFL  240
DLGTGLHTTC RQIDTCQWSL IAGHLPGRTD NEIKNHWNSH LSGRASDFRL GGNGVIVNVN  300
LSKLPGGGKR RGGRTSRGGN ATAAKGKEKE KTAEVMLLHE VKKGQEKDTD APTPSYQPRH  360
DQSEEHASAS GVTSDGLESD GPLGLTEEMV SAPLGHASPK LEMGPDGACV DHKIGLCMDS  420
DDWPRVQSGS GPDGLPSGDV AQELGDNKAL EDWDLTELDL AVDHDVWDSL AWDYDEMVDV  480
VPQGGQQGEL VPDLFFLDNM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-131290582B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00151.1.g00340.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF5218801e-100AF521880.1 Zea mays R2R3 Myb transcription factor MYB-IF35 mRNA, complete cds.
GenBankBT0399011e-100BT039901.1 Zea mays full-length cDNA clone ZM_BFc0050D21 mRNA, complete cds.
GenBankBT0633081e-100BT063308.1 Zea mays full-length cDNA clone ZM_BFc0051B20 mRNA, complete cds.
GenBankBT0882001e-100BT088200.1 Zea mays full-length cDNA clone ZM_BFc0061H17 mRNA, complete cds.
GenBankHQ8587211e-100HQ858721.1 Zea mays clone UT1188 MYB-IF35 transcription factor mRNA, partial cds.
GenBankHQ8587681e-100HQ858768.1 Zea mays clone UT1749 MYB transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004967542.12e-55myb-related protein P
TrEMBLA0A0A9IUA48e-64A0A0A9IUA4_ARUDO; MYB-IF35
STRINGSi002107m7e-55(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3340834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.12e-47myb domain protein 111