PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00150.1.g00170.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family TCP
Protein Properties Length: 419aa    MW: 45472.8 Da    PI: 7.7868
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00150.1.g00170.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP162.81.7e-501693251136
                           TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaessss 80 
                                   aa +kdrhski+T++g+RdRR+Rls+++a++fF+Lqd+LG+dk+skt++WLl+ +k+ai+e++ +  +++sec e++sss 
  Zpz_sc00150.1.g00170.1.am.mk 169 AASRKDRHSKICTAGGMRDRRMRLSLDVARKFFALQDMLGYDKASKTVQWLLNTSKAAIQEIMTD--DASSECvEDGSSSL 247
                                   588**************************************************************..66666999999999 PP

                           TCP  81 sasnsssg......................kaaksaakskksqksaasalnlakesrakarararertrekmriknkl 136
                                   s++ ++ +                      ka+++++++k+++ksa+++  l+ke+rakar+rarertrek+r+++++
  Zpz_sc00150.1.g00170.1.am.mk 248 SVDGKQDPteepggdqqqkgngcsegkkpaKARRATTTPKPPRKSANAHPVLDKETRAKARERARERTREKHRMRWVK 325
                                   9996666677778888888899*******77777777**************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.9E-44171321IPR005333Transcription factor, TCP
PROSITE profilePS5136934.876172230IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137011.54301318IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048831Biological Processregulation of shoot system development
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MVQQVRPCVL TSPHPHEQQA ARYRSPLPVS PLSSSQDLRE GRETHQGLGV PSPKQMFPFC  60
DSPSPMDMLL YQQLQLSPPS PKPDQYSSFY NYPCSPPFAA AADDDASSFH LSYQQLGSAA  120
AVTPPPAVID SPELQIHPSM EQPPAPKHDP SNAQGAGGAV SLDTASAAAA SRKDRHSKIC  180
TAGGMRDRRM RLSLDVARKF FALQDMLGYD KASKTVQWLL NTSKAAIQEI MTDDASSECV  240
EDGSSSLSVD GKQDPTEEPG GDQQQKGNGC SEGKKPAKAR RATTTPKPPR KSANAHPVLD  300
KETRAKARER ARERTREKHR MRWVKLASAI DVEAAAGRDR PSTSNLNHSP SMNMASAAAE  360
LEERCSSTLN NGGRTQQVSM ATEPSDMILT FGNGGYGGIN YCQEQWELGG VVFANSRFY
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Involved in apical dominance. Represses the growth of axillary organs (e.g. lateral branches), but enables the formation of female inflorescences. Regulates the number and length of axillary branches. {ECO:0000269|PubMed:12524360, ECO:0000269|PubMed:16642024, ECO:0000269|PubMed:17947410, ECO:0000269|PubMed:8536981, ECO:0000269|PubMed:9087405}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00150.1.g00170.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982035.11e-168transcription factor TEOSINTE BRANCHED 1
SwissprotQ93WI21e-143TB1_MAIZE; Transcription factor TEOSINTE BRANCHED 1
TrEMBLA0A346M1070.0A0A346M107_CYNDA; Teosinte branched 1
STRINGPavir.Ia00838.1.p1e-171(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72533651
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.12e-24TCP domain protein 12
Publications ? help Back to Top
  1. Tenaillon MI, et al.
    Patterns of DNA sequence polymorphism along chromosome 1 of maize (Zea mays ssp. mays L.).
    Proc. Natl. Acad. Sci. U.S.A., 2001. 98(16): p. 9161-6
    [PMID:11470895]
  2. Clark RM,Tavaré S,Doebley J
    Estimating a nucleotide substitution rate for maize from polymorphism at a major domestication locus.
    Mol. Biol. Evol., 2005. 22(11): p. 2304-12
    [PMID:16079248]