PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zpz_sc00141.1.g00150.1.sm.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 332aa MW: 36953.1 Da PI: 5.2473 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 159.4 | 1.5e-49 | 30 | 159 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratks 80 pGfrFhPtdeelv++yL++kv+gk+l++ e+ike+diyk++PwdLp +++ + +kewyfF+ r +ky+++ r+nr+t s Zpz_sc00141.1.g00150.1.sm.mkhc 30 PGFRFHPTDEELVTFYLRRKVAGKRLSI-EIIKEFDIYKHDPWDLPkASTISMDKEWYFFCLRGRKYRNSIRPNRVTGS 107 9***************************.89***************445555789************************ PP NAM 81 gyWkatgkdkevlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128 g+Wkatg d++++s+ g +glkk+Lvfy+g+ kg+kt+W+mhe+rl Zpz_sc00141.1.g00150.1.sm.mkhc 108 GFWKATGIDRPIHSAaagrAGDCIGLKKSLVFYRGSCGKGTKTEWMMHEFRL 159 **************977666666***************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 53.931 | 28 | 186 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 4.18E-53 | 29 | 186 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.3E-25 | 30 | 159 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 332 aa Download sequence Send to blast |
MKSSGHGDQV DEEVVLVGNE DEGEDLVDLP GFRFHPTDEE LVTFYLRRKV AGKRLSIEII 60 KEFDIYKHDP WDLPKASTIS MDKEWYFFCL RGRKYRNSIR PNRVTGSGFW KATGIDRPIH 120 SAAAGRAGDC IGLKKSLVFY RGSCGKGTKT EWMMHEFRLP PRAESAGSSP SSHEAEVWTI 180 CRIFRRSLTY KKQPQAQSTV ASLAGAAPQP DSSSNTGSLD SADTGDEYMT GLLPQVPSDN 240 NASRVDYNSY QQFQGQWING LGQQQLPVSS AADTQPSPGM AASAFYHGVH GNLVDAPAGE 300 EYYKDEYCSW DDIGRMVMEL TDPSQFYDCT LV |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-48 | 30 | 197 | 19 | 170 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-48 | 30 | 197 | 19 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-48 | 30 | 197 | 19 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-48 | 30 | 197 | 19 | 170 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-48 | 30 | 197 | 22 | 173 | NAC domain-containing protein 19 |
3swm_B | 3e-48 | 30 | 197 | 22 | 173 | NAC domain-containing protein 19 |
3swm_C | 3e-48 | 30 | 197 | 22 | 173 | NAC domain-containing protein 19 |
3swm_D | 3e-48 | 30 | 197 | 22 | 173 | NAC domain-containing protein 19 |
3swp_A | 3e-48 | 30 | 197 | 22 | 173 | NAC domain-containing protein 19 |
3swp_B | 3e-48 | 30 | 197 | 22 | 173 | NAC domain-containing protein 19 |
3swp_C | 3e-48 | 30 | 197 | 22 | 173 | NAC domain-containing protein 19 |
3swp_D | 3e-48 | 30 | 197 | 22 | 173 | NAC domain-containing protein 19 |
4dul_A | 2e-48 | 30 | 197 | 19 | 170 | NAC domain-containing protein 19 |
4dul_B | 2e-48 | 30 | 197 | 19 | 170 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Zpz_sc00141.1.g00150.1.sm.mkhc |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025803594.1 | 1e-145 | transcription factor JUNGBRUNNEN 1-like | ||||
TrEMBL | A0A3L6T4I2 | 1e-144 | A0A3L6T4I2_PANMI; Transcription factor JUNGBRUNNEN 1-like | ||||
STRING | Si030477m | 1e-141 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1191 | 38 | 129 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G43000.1 | 3e-81 | NAC domain containing protein 42 |