PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00124.1.g00600.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB_related | ||||||||
Protein Properties | Length: 448aa MW: 48488.8 Da PI: 7.0791 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.2 | 1.6e-17 | 64 | 108 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+eE++++++avk++G W+ I +++g ++t+ q++s+ qk+ Zpz_sc00124.1.g00600.1.sm.mk 64 REKWTEEEHDKFLEAVKLYGRS-WRQIQEHIG-TKTAVQIRSHAQKF 108 789*****************55.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.2E-11 | 58 | 110 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.2E-15 | 59 | 112 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 22.722 | 59 | 113 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 3.0E-16 | 62 | 111 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 8.8E-15 | 63 | 111 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.4E-15 | 64 | 107 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.11E-11 | 66 | 109 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 448 aa Download sequence Send to blast |
MATVALVEVK ASPFAERDGV ESSSLRPPLD VAKPPVVDGV MQFKEGMDGY PVKVRKPYKI 60 TKQREKWTEE EHDKFLEAVK LYGRSWRQIQ EHIGTKTAVQ IRSHAQKFFS KVVREPGAGD 120 MIEIPPPRPK RKPLHPYPRK CANSSTRADP KLGPVSPSSG SYQENGSPVS VLSAVQSDAF 180 GSSVSNPSTG CTSSASSDGG NNGLVMLNGE EILPRNQAEM DLSPKEVKQD NSDGDLSEED 240 SSRKASLKLF GKTLIIPDPE KLCSLDGGPQ SSSKEMFEAA FIGGVATYAA ANEWLLQRRS 300 FPFCMGESRD ARIPLLHVWW PYYGFPVSHP RELGAVLNGE GAGESDTGKS PSAESSSDSM 360 GGVQTTMLTS CEVAKESLRA MQTPDSSALI FELKPGVNSA FVPVKPSCSG SQSTRGFVPY 420 KSEAEIGLCV IASFFQLKKL KYTGEANL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00124.1.g00600.1.sm.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ024049 | 2e-88 | FJ024049.1 Zea mays MYB-like protein E1 (MYBE1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004966527.1 | 0.0 | uncharacterized protein LOC101785788 | ||||
TrEMBL | A0A3L6S0P2 | 0.0 | A0A3L6S0P2_PANMI; Uncharacterized protein | ||||
STRING | Si006457m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7783 | 36 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17300.1 | 2e-38 | MYB_related family protein |