PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00113.1.g00560.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 263aa    MW: 27388.3 Da    PI: 6.2369
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00113.1.g00560.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2574.7e-1881131155
                           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   + y+GVr+++ +g Wv+eIr+p++   + r++lg+f tae+Aa+a++ a+++ +g
  Zpz_sc00113.1.g00560.1.sm.mk  81 PSYRGVRRRS-WGVWVSEIREPRK---KSRIWLGTFPTAEMAARAHDVAALAVKG 131
                                   57*****887.**********843...6**********************98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.1E-1281131IPR001471AP2/ERF domain
CDDcd000183.57E-2881141No hitNo description
PROSITE profilePS5103223.40682139IPR001471AP2/ERF domain
SMARTSM003803.9E-3582145IPR001471AP2/ERF domain
SuperFamilySSF541712.62E-2082140IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.3E-3182140IPR001471AP2/ERF domain
PRINTSPR003675.8E-108394IPR001471AP2/ERF domain
PRINTSPR003675.8E-10105121IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MESDAIHAPA TPSSSDSGSC VINGAQEQSK NGKPSVKHRK RTRAASPSGP AAAGARAPEA  60
VDDEHGEKGS SRSKRAAGRH PSYRGVRRRS WGVWVSEIRE PRKKSRIWLG TFPTAEMAAR  120
AHDVAALAVK GRAAHLNFPH LAHELPRPAS TSPADIQAAA AVAAAAAADT AADPCESSPA  180
AEASSSSSAA FSEDATAAGR VEENALFDLP DLLLDLQNGL WLSSLWAAAP AAAEEYDVVG  240
LHEPLLWADG QCWLDAAAPG QLD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-18801401273Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00113.1.g00560.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008646010.18e-81ethylene-responsive transcription factor ERF038
SwissprotQ8LBQ72e-47ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A3L6EZ193e-82A0A3L6EZ19_MAIZE; Ethylene-responsive transcription factor ERF034
STRINGGRMZM5G842961_P013e-80(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.14e-20ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]