PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00109.1.g00710.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GATA
Protein Properties Length: 340aa    MW: 36001.4 Da    PI: 6.4001
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00109.1.g00710.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA44.52.1e-14265290934
                            GATA   9 TplWRrgpdgnktLCnaCGlyyrkkg 34 
                                     Tp+WR gp g+ktLCnaCG++y++ +
  Zpz_sc00109.1.g00710.1.sm.mkhc 265 TPQWRAGPLGPKTLCNACGVRYKSGR 290
                                     9**********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004014.2E-5260301IPR000679Zinc finger, GATA-type
CDDcd002022.42E-11262313No hitNo description
Gene3DG3DSA:3.30.50.102.1E-9264288IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577162.52E-9264314No hitNo description
PfamPF003205.5E-12265290IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
QKSSQRREAA STHRLLLGAK SRRSMASGAF LDQMLREQSL LEATCGDLFD HIEDLLDFSK  60
EESAADVLLL DAPAPGSPLS ARIIDVGARS NAVEPSPALV APAQDGLFVD AAAAGAQGFK  120
DGGHIGTCDD LDMAQLEWLS GLFDDTSIPH EPAFPATCAA PIKSSELAAS AGLPMLPPDE  180
LDDTVFRSSS PISVLEHNNN NAGSASSSSS SSSSSSAWSA PVSPRPEPPA LVIPARARSK  240
RSRASAFSGD RAVEPPTILV PTPITPQWRA GPLGPKTLCN ACGVRYKSGR LFPEYRPAAS  300
PTFVPSIHSN SHKKVVEMRQ KAVRSGDPSC DLLQFIRRRD
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00109.1.g00710.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0542696e-97BT054269.1 Zea mays full-length cDNA clone ZM_BFb0206G24 mRNA, complete cds.
GenBankBT0557556e-97BT055755.1 Zea mays full-length cDNA clone ZM_BFb0170C21 mRNA, complete cds.
GenBankBT0670676e-97BT067067.1 Zea mays full-length cDNA clone ZM_BFb0175B18 mRNA, complete cds.
GenBankEU9676756e-97EU967675.1 Zea mays clone 305252 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015688759.11e-127PREDICTED: GATA transcription factor 6-like
TrEMBLA0A2T7FDI56e-94A0A2T7FDI5_9POAL; Uncharacterized protein
TrEMBLA0A2T8KYD86e-94A0A2T8KYD8_9POAL; Uncharacterized protein
TrEMBLJ3LI557e-95J3LI55_ORYBR; Uncharacterized protein
STRINGPavir.Ab03246.1.p1e-94(Panicum virgatum)
STRINGOB02G43220.11e-95(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51693451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.23e-30GATA family protein