PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00108.1.g00670.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | ERF | ||||||||
Protein Properties | Length: 103aa MW: 10701.6 Da PI: 4.7148 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 30.9 | 6.7e-10 | 64 | 103 | 1 | 46 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaa 46 s++kGV + +grW A+I++ r r++lg+f +e Aa+a+ Zpz_sc00108.1.g00670.1.am.mk 64 SRFKGVVPQP-NGRWGAQIYE------RhERVWLGTFPDEEAAARAY 103 789***9788.8*********......44**********66666665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.24E-14 | 64 | 103 | No hit | No description |
SuperFamily | SSF54171 | 1.57E-10 | 64 | 103 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 4.0E-5 | 64 | 103 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.1E-12 | 65 | 103 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.2E-5 | 65 | 103 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.778 | 65 | 103 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.2E-5 | 66 | 77 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.2E-5 | 86 | 102 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 103 aa Download sequence Send to blast |
MGVESLSSTA ADYSFSSSRS TATTESGVAQ LPVAAAPGCE ISPHDEAVTS QPSAAAAATA 60 QGSSRFKGVV PQPNGRWGAQ IYERHERVWL GTFPDEEAAA RAY |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00108.1.g00670.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP095812 | 6e-45 | FP095812.1 Phyllostachys edulis cDNA clone: bphyem125h21, full insert sequence. | |||
GenBank | FP096835 | 6e-45 | FP096835.1 Phyllostachys edulis cDNA clone: bphyem207b07, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020191174.1 | 4e-29 | AP2/ERF and B3 domain-containing protein Os01g0141000-like isoform X2 | ||||
Refseq | XP_020200372.1 | 4e-29 | AP2/ERF and B3 domain-containing protein Os01g0141000-like isoform X2 | ||||
Refseq | XP_020201147.1 | 4e-29 | AP2/ERF and B3 domain-containing protein Os01g0141000-like isoform X2 | ||||
Swissprot | Q9AWS0 | 2e-19 | Y1410_ORYSJ; AP2/ERF and B3 domain-containing protein Os01g0141000 | ||||
TrEMBL | A0A3B6FIV4 | 4e-28 | A0A3B6FIV4_WHEAT; Uncharacterized protein | ||||
STRING | MLOC_7940.1 | 5e-29 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18707 | 5 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G25730.1 | 3e-21 | ethylene response DNA binding factor 3 |
Publications ? help Back to Top | |||
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