PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00095.1.g00220.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GATA
Protein Properties Length: 534aa    MW: 56363.4 Da    PI: 8.3151
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00095.1.g00220.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.67.1e-18451484134
                          GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                                   C++C+  kTp+WR gp g+ktLCnaCG++y++ +
  Zpz_sc00095.1.g00220.1.am.mk 451 CTHCQIEKTPQWRAGPLGPKTLCNACGVRYKSGR 484
                                   *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577161.71E-14443507No hitNo description
SMARTSM004011.7E-15445495IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.147445481IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.104.6E-14449482IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.78E-14450507No hitNo description
PROSITE patternPS003440451476IPR000679Zinc finger, GATA-type
PfamPF003201.6E-15451484IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    Send to blast
MRCSHGAWAP HRHPHAPRTF ARRRWSPACR HFEIKIHPLL LPLFIAASFL LPSPPPPYAT  60
QAIDRPMASG VFAEQMAREQ SLLEATCGDL FDHIDDLLDF SKEESAADVL LLDAPAPGSP  120
ISARIIDVGA RRSDAPVSAA VVQPPTLVPP PTGDAFFEDV AGAHGFKDGA GHIGSSKVVF  180
AVSPRRNDGR GAGGWPARAN QQAASVTRGA AVRGDYLSVR GGWLGGGWGC RCSCEDLDMA  240
QLEWLSGLFD DASIPHEPAF PAMTTCAAPI KSSALAANGH MPLPLPDKLD DAVFRSSSPT  300
SVLEHNGFNA GSSNTNAAAG SASSSSTNSS SSSSSAWSAP VTSPRPDPPV LVIPARARSK  360
RSRPSAFAGG RAVEPPTILV PTPMFSAASS LSDPESIAES NPDPAPAKKK KAKKPAAPAP  420
AASDAEGDGD GDADYVEGGE RSQPQGTVRR CTHCQIEKTP QWRAGPLGPK TLCNACGVRY  480
KSGRLFPEYR PAASPTFVPS IHSNSHKKVV EMRQKAVRSG DPSCDLLQFI RRRD
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00095.1.g00220.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0542691e-159BT054269.1 Zea mays full-length cDNA clone ZM_BFb0206G24 mRNA, complete cds.
GenBankBT0557551e-159BT055755.1 Zea mays full-length cDNA clone ZM_BFb0170C21 mRNA, complete cds.
GenBankBT0670671e-159BT067067.1 Zea mays full-length cDNA clone ZM_BFb0175B18 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004954283.11e-173GATA transcription factor 8
RefseqXP_004954284.11e-173GATA transcription factor 8
TrEMBLK3YSS21e-172K3YSS2_SETIT; Uncharacterized protein
STRINGSi017314m1e-172(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51693451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.22e-36GATA family protein