PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00084.1.g00470.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 244aa MW: 26861.3 Da PI: 10.5044 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.8 | 1.9e-18 | 125 | 179 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++t+ q Le+ F+ ++ +++++++eLA++ gL+ rqV+vWFqNrRa+ k Zpz_sc00084.1.g00470.1.sm.mk 125 RKKLRLTSAQAALLEDSFRAHNILTHAQKQELARRAGLSARQVQVWFQNRRARTK 179 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 103.9 | 1.3e-33 | 125 | 213 | 1 | 89 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLe 81 +kk+rl++ q++lLE+sF++++ L++ +K+elar+ gl++rqv+vWFqnrRARtk+k++E+d++ L+r+ d+l++enerL+ Zpz_sc00084.1.g00470.1.sm.mk 125 RKKLRLTSAQAALLEDSFRAHNILTHAQKQELARRAGLSARQVQVWFQNRRARTKLKKTEVDCKLLRRWRDRLTDENERLR 205 69******************************************************************************* PP HD-ZIP_I/II 82 keveeLre 89 ++ +eLr+ Zpz_sc00084.1.g00470.1.sm.mk 206 RDLDELRA 213 ******94 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 9.2E-18 | 106 | 182 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.13E-18 | 117 | 182 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.038 | 121 | 181 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.2E-15 | 123 | 185 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 7.9E-16 | 125 | 179 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.95E-14 | 125 | 182 | No hit | No description |
PRINTS | PR00031 | 6.9E-6 | 152 | 161 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 156 | 179 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 6.9E-6 | 161 | 177 | IPR000047 | Helix-turn-helix motif |
SMART | SM00340 | 9.3E-13 | 181 | 224 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MSSLTTAGSR SSMEECSAEF DTRLSLEIGE TSRATPPPQS LRLFGELIIS PQEQDHGGDG 60 SLGHRGTTRV PVARRKRRAE CGGVASGDID AAGGGRQNKK AIRTLQSSEE DNGDRQRIPS 120 DGGSRKKLRL TSAQAALLED SFRAHNILTH AQKQELARRA GLSARQVQVW FQNRRARTKL 180 KKTEVDCKLL RRWRDRLTDE NERLRRDLDE LRAVSAARLP AAAVSVVCPY CCDKKMVAVA 240 GDVA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 123 | 129 | SRKKLRL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00084.1.g00470.1.sm.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004951890.1 | 3e-66 | putative homeobox-leucine zipper protein HOX26 | ||||
Swissprot | Q67UX6 | 3e-44 | HOX26_ORYSJ; Putative homeobox-leucine zipper protein HOX26 | ||||
TrEMBL | A0A1E5UWC5 | 4e-65 | A0A1E5UWC5_9POAL; Putative homeobox-leucine zipper protein HOX26 | ||||
STRING | Si018305m | 1e-65 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8315 | 32 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01430.1 | 2e-26 | homeobox-leucine zipper protein 17 |