PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00077.1.g00340.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family Trihelix
Protein Properties Length: 633aa    MW: 68031.1 Da    PI: 7.4621
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00077.1.g00340.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix35.92e-112454287
                        trihelix 42 gferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
                                    g++r++k+C+ek+en+ k+yk++k+g+ +r  ++ + +++f++lea
  Zpz_sc00077.1.g00340.1.sm.mkhc  2 GYNRNAKKCREKFENVDKYYKRTKDGRAGR--GDGKAYRFFSELEA 45
                                    9***************************97..66667******985 PP
2trihelix108.15.8e-34330415187
                        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstc 79 
                                     rW+k ev+aLi++r+e+e r+++++ k+plWe++s+ mr+ g++r++k+Ckekwen+nk++kk+ke++kkr +e+s+tc
  Zpz_sc00077.1.g00340.1.sm.mkhc 330 RWPKAEVHALIQLRTELEARYQDSSPKGPLWEDISAGMRRLGYNRNAKRCKEKWENINKYFKKVKESNKKR-PEDSKTC 407
                                     8*********************************************************************8.99***** PP

                        trihelix  80 pyfdqlea 87 
                                     py++ql+a
  Zpz_sc00077.1.g00340.1.sm.mkhc 408 PYYHQLDA 415
                                     ******85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138377.2E-8246No hitNo description
PROSITE profilePS500907.027329387IPR017877Myb-like domain
CDDcd122031.81E-32329394No hitNo description
PfamPF138379.2E-24330416No hitNo description
Gene3DG3DSA:1.10.10.609.2E-4330386IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 633 aa     Download sequence    Send to blast
MGYNRNAKKC REKFENVDKY YKRTKDGRAG RGDGKAYRFF SELEALHGAS SPHPPASLAP  60
TPVAMAPPAP FHLSGVRSMA PAMHAEPPQP PPVVTMTSAA PTGGTTATCT FTAGDVSFSS  120
SSDGEDTEET GDGGKRKRRD GDGGRGSSKM MRFFEGLMRQ VMERQEVMQQ RFIEAIERRE  180
QERMIREEAW RRQELAHLAR EQDALAQERA MAASRDAAVV SFIQRITGQT IPVPTSVPAP  240
QVTMISALKP TPVASAAPAP PPPPQHYHRQ PPSSVQLPAA PKPHTAVPPI SATQTRRQTP  300
QTESKDGTVV RGLAESQDTA GSGGAPSPSR WPKAEVHALI QLRTELEARY QDSSPKGPLW  360
EDISAGMRRL GYNRNAKRCK EKWENINKYF KKVKESNKKR PEDSKTCPYY HQLDALYRSK  420
ALASSGAGGS APHPRPEAVT VLAAVPLSQT APHHQVVTGG GNKQDCNTGN GNRSGCCASE  480
NGGRSGDMQT PGSNGGVSAN TIRLSTEGPG GNGTATKNKE DNIITKETAP AEETPQPVSM  540
NDSYAHDRMD AGDDSDSMDD DEDDSDEDED EGDVGSGGNN NNKTMQYEIQ FQRQHQSQSQ  600
SQSGVVRPNA SGGAGSGPGP ATASGSFLTM VHH
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00077.1.g00340.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1214901e-107AC121490.2 Oryza sativa Japonica Group chromosome 3 clone OSJNBb0005F16, complete sequence.
GenBankAC1342371e-107AC134237.2 Oryza sativa Japonica Group chromosome 3 clone OSJNBa0090O10, complete sequence.
GenBankAK2418001e-107AK241800.1 Oryza sativa Japonica Group cDNA, clone: J065208I24, full insert sequence.
GenBankAP0149591e-107AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025791925.10.0trihelix transcription factor GTL1-like
TrEMBLA0A2T7CIN40.0A0A2T7CIN4_9POAL; Uncharacterized protein
STRINGSi034382m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60638175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.22e-50Trihelix family protein