PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00074.1.g00240.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | WRKY | ||||||||
Protein Properties | Length: 267aa MW: 28958.6 Da PI: 8.4977 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 78.1 | 1e-24 | 116 | 175 | 2 | 58 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 dDg++WrKYGqK++ gs +prsYYrC ++ gC++kk +r+++dp++++++Y g+H++ Zpz_sc00074.1.g00240.1.am.mk 116 DDGHSWRKYGQKPILGSIHPRSYYRCRHRhsqGCKAKKMAQRADDDPTLFDVIYYGTHTC 175 7**************************988889*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 6.0E-26 | 103 | 175 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 22.114 | 110 | 173 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.18E-24 | 112 | 175 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.2E-34 | 115 | 177 | IPR003657 | WRKY domain |
Pfam | PF03106 | 9.2E-25 | 116 | 175 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 267 aa Download sequence Send to blast |
MERIVHGNEG GTRLVVTELS HIKDLVRQLE THLDGPHGRC KHLTSQIFSL AERSIGLITA 60 AGLDATRKRS GLASATPSAL GGFADVPLKS TKRRVTMRKH QVRVKAAEGR EAPVDDDGHS 120 WRKYGQKPIL GSIHPRSYYR CRHRHSQGCK AKKMAQRADD DPTLFDVIYY GTHTCVDTTA 180 ATAGQVTAPA PEHDPNTGTL PRSPCGGLIV KTEGLAAATE QRNGNDNTTT PFCSTLASPV 240 SWCLSPATTS DIADEFFDID VIANFFA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 5e-19 | 116 | 175 | 9 | 68 | OsWRKY45 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 87 | 93 | LKSTKRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00074.1.g00240.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025800891.1 | 4e-73 | probable WRKY transcription factor 30 | ||||
TrEMBL | A0A1E5WLZ7 | 8e-75 | A0A1E5WLZ7_9POAL; Putative WRKY transcription factor 53 | ||||
STRING | ORUFI09G06720.1 | 4e-71 | (Oryza rufipogon) | ||||
STRING | OS09T0334500-01 | 4e-71 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1086 | 38 | 131 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46400.1 | 1e-28 | WRKY DNA-binding protein 46 |