PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00062.1.g00280.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | ERF | ||||||||
Protein Properties | Length: 428aa MW: 47423.6 Da PI: 7.9776 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.6 | 1.3e-17 | 234 | 280 | 2 | 52 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkk 52 y+GVr + +g+Wv+eIr+p++ + r++lg+f t+e+Aa+a++aa++ Zpz_sc00062.1.g00280.1.am.mk 234 TYRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDAAALV 280 69****998.**********843...6*********************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 6.2E-31 | 234 | 292 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.6E-12 | 234 | 280 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.7E-35 | 234 | 297 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.21E-21 | 234 | 292 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.998 | 234 | 291 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.4E-10 | 235 | 246 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.13E-18 | 235 | 293 | No hit | No description |
PRINTS | PR00367 | 8.4E-10 | 257 | 273 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 428 aa Download sequence Send to blast |
MVVKNQRLDP ANSGYISSWV AKGCVKSDAG QRGLGVDSDH ETIESSTTPG RAGRGWRRSN 60 WFFYLDPRAP CFCRCRHEQW TLLLPQGPRN LFNFDWWMMC RTTIIGRARH TGGFYLRSFL 120 LNSGDEIDDR ASIFTSSCDG NVGQTRIAPA RPDALLLCAH CTAFLTRAYA WPAPATATTG 180 SSFPRSFAIL TMPDSDVTSP PAPSPLGTVE KRGCRRGGNG NSGCGGGSSK RHPTYRGVRM 240 RAWGKWVSEI REPRKKSRIW LGTFPTPEMA ARAHDAAALV VKGPAAVLNF PETAASLPRP 300 AXXXRPRAPR PWTWTTATWA ARQCRQQQCG QQAQGQAVDD DEELEEIVEL PPVDEECFAE 360 DGLTFRTPFH VDSDVAQPWY EMAWTAQAGV AAQDYEMVVP GLEQDHRLRT LTDGNEVFSG 420 FGSLLWNL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-16 | 225 | 291 | 5 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00062.1.g00280.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003682 | 1e-76 | AP003682.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0427B07. | |||
GenBank | AP014962 | 1e-76 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025813011.1 | 7e-55 | ethylene-responsive transcription factor ERF038-like | ||||
TrEMBL | A0A3L6PI47 | 1e-52 | A0A3L6PI47_PANMI; Ethylene-responsive transcription factor TINY isoform X3 | ||||
STRING | MLOC_17203.1 | 1e-49 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP48742 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11590.1 | 8e-30 | ERF family protein |