PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00058.1.g00220.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | AP2 | ||||||||
Protein Properties | Length: 396aa MW: 43519.4 Da PI: 6.3228 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 37.2 | 7.3e-12 | 129 | 185 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + ++ k + g ++ +e+Aa+a++ a++k++g Zpz_sc00058.1.g00220.1.am.mk 129 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEEKAARAYDLAALKYWG 185 57*******************5444.2455536655.779999**************98 PP | |||||||
2 | AP2 | 32.5 | 2.2e-10 | 278 | 319 | 11 | 55 |
AP2 11 krgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 grW A+I + +k +lg+f t eeAa+a++ a+ k++g Zpz_sc00058.1.g00220.1.am.mk 278 EHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 319 37******988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.42E-15 | 129 | 195 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 5.43E-18 | 129 | 195 | No hit | No description |
Pfam | PF00847 | 2.5E-9 | 129 | 185 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-12 | 130 | 194 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.5E-23 | 130 | 199 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.477 | 130 | 193 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.2E-5 | 131 | 142 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.2E-5 | 175 | 195 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 16.529 | 267 | 327 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.4E-15 | 275 | 328 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.25E-19 | 275 | 329 | No hit | No description |
SMART | SM00380 | 6.6E-24 | 275 | 333 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.7E-14 | 276 | 329 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.9E-5 | 278 | 319 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 396 aa Download sequence Send to blast |
MDMDMSSTIY PHHWLSFSLS NNYHHGLLEA FSNSSAPQLG EEGAGVEETP KMEDFLGGVG 60 GTGAPHAAPA EDHQLGCGEL GSIAAGFCRQ YPASGMPENP GAVTIATGME VAESDQARRP 120 AETFGQRTSI YRGVTRHRWT GRYEAHLWDN SCRREGQSRK GRQGGYDKEE KAARAYDLAA 180 LKYWGPTTTT NFPVSNYEKE LEEMKSMTRQ EFIASLRRAV LAAAFFATYT PRRTRACGHS 240 VCWPVAMGSH VDLFVFLLFC QEEQRLLTRS LHLQRSHEHG RWQARIGRVA GNKDLYLGTF 300 STQEEAAEAY DIAAIKFRGL NAVTNFDMSR YDVESIVNSD LPVGGGAAGR ASKFPLDSLG 360 PTDAAGYEGS TGNNGTWVTS ATSTAPQFYN YLFGME |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00058.1.g00220.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT040003 | 1e-103 | BT040003.1 Zea mays full-length cDNA clone ZM_BFc0057O19 mRNA, complete cds. | |||
GenBank | KJ727485 | 1e-103 | KJ727485.1 Zea mays clone pUT5344 AP2-EREBP transcription factor (EREB152) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004965682.1 | 0.0 | AP2-like ethylene-responsive transcription factor AIL5 | ||||
Swissprot | Q6PQQ3 | 1e-103 | AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5 | ||||
TrEMBL | A0A1E5V5G5 | 0.0 | A0A1E5V5G5_9POAL; AP2-like ethylene-responsive transcription factor AIL5 | ||||
STRING | Si008325m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP797 | 38 | 151 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57390.1 | 9e-98 | AINTEGUMENTA-like 5 |
Publications ? help Back to Top | |||
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