PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00046.1.g00130.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family SBP
Protein Properties Length: 601aa    MW: 65175.1 Da    PI: 9.6412
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00046.1.g00130.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP1283.7e-40377455178
                                   --SSTT-----TT--HHHHHTT--HHHHT-S-EE.ETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                           SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvl.vsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                                   +Cq+egC+adls+ak+yhrrhkvCe+hskapvv+ + gl+qrfCqqCsrfh l+efD++k+sCr+rLa+hn+rrrk+++
  Zpz_sc00046.1.g00130.1.am.mk 377 RCQAEGCKADLSSAKRYHRRHKVCEHHSKAPVVVtAGGLHQRFCQQCSRFHLLDEFDDAKKSCRKRLADHNRRRRKSKP 455
                                   6******************************98725689*************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.8E-33372440IPR004333Transcription factor, SBP-box
PROSITE profilePS5114130.291375453IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.27E-36376456IPR004333Transcription factor, SBP-box
PfamPF031101.5E-30378452IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009554Biological Processmegasporogenesis
GO:0009556Biological Processmicrosporogenesis
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 601 aa     Download sequence    Send to blast
MLGPEEVESG LSWLKWKSRL VANELPELES IISEMKDKMK ARHQRGVGRL ILAPLGAVDG  60
SRRARTGRAG SRSGTVVRLA APAAALIALG RNTIDRVLGH EITSHEWDAH RPSWSLPASR  120
RWRTPGAVAP SSAPAMERAA YAAAPDPAVS SSLSSFLQGT HATVPYATLK RLRYWTSQPK  180
CLSSPAASEL ASTRRERDDS VLAASSPPKK KKRKMMNIPA AGANACDEFA YVSPGAAPPS  240
LLPIMEQESS IQREQLGYNL EANSLALLPP STAAAAHQQA TIAAHDILQF YPAAAASSHY  300
LGGGGGNPYS HHFGGSNYQA YYQQAAQASP EYYFPTLVSS AEENMASFAA TQLGLNLGYR  360
TYFPPRGGYT YGHHPPRCQA EGCKADLSSA KRYHRRHKVC EHHSKAPVVV TAGGLHQRFC  420
QQCSRFHLLD EFDDAKKSCR KRLADHNRRR RKSKPTDADA ADKKRAQASK AAAGAKDKAG  480
SSSKNNMDIG DGLTTQILGS ALLSKEQDQA MDLGEVVKEA VDPKGKASMQ QQHAHHHGMS  540
NHSFPFPTSS GSCFPQSQAV SSDNTSNIAQ VQEPSLAFHQ HHQHNNILQL GQAMFDMDFD  600
H
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-263784521184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1208213KKKKRK
2447464RRRRKSKPTDADAADKKR
3448453RRRKSK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that plays an important role in building the laminar joint between leaf blade and leaf sheath boundary, thereby controlling ligule and auricle development. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00090SELEXTransfer from AT1G02065Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00046.1.g00130.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankZMU894960.0U89496.1 Zea mays liguleless1 protein (liguleless1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004960135.10.0protein LIGULELESS 1
SwissprotQ01KM70.0SPL8_ORYSI; Squamosa promoter-binding-like protein 8
TrEMBLA0A0A9DKR30.0A0A0A9DKR3_ARUDO; Lg1
STRINGSi022315m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69903452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.11e-40squamosa promoter binding protein-like 8