PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00045.1.g00430.1.sm.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB_related | ||||||||
Protein Properties | Length: 872aa MW: 91546.2 Da PI: 10.3345 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28 | 4.9e-09 | 205 | 247 | 4 | 44 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrw 44 W++eEd l+ +v+++G g+W+ I + + ++Rt q+ rw Zpz_sc00045.1.g00430.1.sm.mkhc 205 WSKEEDADLAAGVQKYGEGNWEIILDKCNfrTTRTSDQLSQRW 247 *****************************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 9.382 | 197 | 256 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-10 | 197 | 249 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.08E-11 | 200 | 253 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.7E-5 | 201 | 253 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 2.40E-16 | 203 | 252 | No hit | No description |
Pfam | PF00249 | 2.6E-7 | 205 | 247 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 872 aa Download sequence Send to blast |
MAAAPAAGMG KGKRKRPLSE DDVYLLLHRY TPATILTALQ EVAQHAKGRR IDWKALVGKS 60 TTGITSPREY QMLWRHFAYH HDLAESVDAS SSPLDDDSDL ECELERIPNP SKEALSEASS 120 LAKILIYGSS REQASGHRVN MDVLQNSANE KIVQVPSDKQ LSQSQRLTTV MGLASNSKQA 180 SQTGPSPDPS DANGASKKKR KIKMWSKEED ADLAAGVQKY GEGNWEIILD KCNFRTTRTS 240 DQLSQRWALI SKRPGSAKPG TAKQVSITTS EERMATRKAL SLAVDYNPCT RKLSAARSGA 300 QQFSGQHNST VFGAAIPEVK SVAAPFAAPR QAPVPAPMQM PVTMPLPVTV QVQAPLPQGQ 360 QAPPQAPPPK APNASNKTRN NSKKQTVPQN PAMISSSIQA AAIAAGGRIA TPTTAANHLK 420 ATQSKNAVHI RTRVTVSSTS SVGSKESNIV LEPRTQLGGV ELLELPNTVA SVSAPSILPT 480 HATQQILDVS AADPPGPSSG EHFMDTKKAL NASAVSASCN SWEQDDNSTF CIVTMADLFP 540 EDANESESIN PKEKRPEAIG PEEKQQDSVD LREKQLVSLG PKTKKPGTTN PKIEGIIDSK 600 DADMLEFDQF VASQRGASVS MDYLDTSNSV RSAPSTQGSA GSQNKQLKSV PTAGRSNSLC 660 AGMSTFGKKT KSPVPHPVTL MPTGTPRVNV LALSSAKNKT VVRKAATPTT AGGQNLLMQK 720 QALNTKGNQI PNSVAVSVTS VVPGSSPAST LVNAASKVNP PISSPASTVV DVAGKMNPPG 780 SSQASTVVNA VGKANPPGRT PASPVIIALG KVNPPGNSQT STVVNGTSKE NPAGSGKTST 840 MVNGGSKVNP LRSSQASKVV SGVTKANPLA SQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00045.1.g00430.1.sm.mkhc |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004952835.1 | 0.0 | nascent polypeptide-associated complex subunit alpha, muscle-specific form | ||||
TrEMBL | K3YPR8 | 0.0 | K3YPR8_SETIT; Uncharacterized protein | ||||
STRING | Si016260m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4684 | 37 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09710.2 | 2e-32 | MYB_related family protein |