PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00041.1.g00110.1.sm.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | ERF | ||||||||
Protein Properties | Length: 297aa MW: 32228.9 Da PI: 5.1285 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.3 | 2.2e-19 | 105 | 154 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp+ r r++lg+f ta+ Aa+a++aa+++l+g Zpz_sc00041.1.g00110.1.sm.mkhc 105 RYRGVRQRP-WGKWAAEIRDPV----RgVRVWLGTFSTADSAARAYDAAARRLRG 154 7********.**********63....56*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 5.9E-13 | 105 | 154 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.51E-22 | 105 | 163 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 24.684 | 105 | 162 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.08E-17 | 105 | 161 | No hit | No description |
SMART | SM00380 | 1.1E-37 | 105 | 168 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.7E-32 | 105 | 164 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.0E-11 | 106 | 117 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.0E-11 | 128 | 144 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 297 aa Download sequence Send to blast |
MCGGAIIADL IPERSRCSRQ PSHPALPSKK RSWRDHDADI VDIDDFEAAF EEFEGDSDEE 60 AVVHVDDDEE SELTLLAPLG RKPLSPLFPR GARRAKDAMR PGARRYRGVR QRPWGKWAAE 120 IRDPVRGVRV WLGTFSTADS AARAYDAAAR RLRGTKAKLN FPSSSSPPRR KRRRDNAGTC 180 TSSPSTKTDV PAFVPAVDYG ATAAVFGENL SSQKLADEGD PALLLPSLAG AAASWSAGDS 240 EVVDPPYDFS GEIMTSCFAL TGCEYKSLET LFSGETAVEE HGLMGPWSFG EGGSFIF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 5e-21 | 104 | 162 | 4 | 63 | ATERF1 |
3gcc_A | 5e-21 | 104 | 162 | 4 | 63 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 169 | 173 | RKRRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00041.1.g00110.1.sm.mkhc |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025791795.1 | 6e-69 | ethylene-responsive transcription factor 1-like | ||||
TrEMBL | A0A1E5W3L0 | 8e-76 | A0A1E5W3L0_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ib02796.1.p | 6e-69 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15195 | 14 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47520.1 | 9e-20 | ERF family protein |