PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00040.1.g00480.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 337aa    MW: 35587.2 Da    PI: 10.4494
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00040.1.g00480.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.11.2e-19152201255
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                                   +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae Aa+a++ a+++++g
  Zpz_sc00040.1.g00480.1.am.mk 152 RYRGVRQRP-WGKWAAEIRDP-----HraARVWLGTFDTAEAAARAYDVAALQFRG 201
                                   7********.**********7.....338************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.109.8E-33152211IPR001471AP2/ERF domain
SMARTSM003802.4E-35152215IPR001471AP2/ERF domain
PfamPF008479.6E-14152201IPR001471AP2/ERF domain
PROSITE profilePS5103225.949152209IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-22152211IPR016177DNA-binding domain
PRINTSPR003677.9E-12153164IPR001471AP2/ERF domain
CDDcd000183.49E-16160211No hitNo description
PRINTSPR003677.9E-12175191IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MHCTSSGFTL SLPPLLACLH VSLYICCPPK VATSPPAGGG SGEQRRRLAG VAEEGGEERS  60
AVDSASSTPS MPLSQSRRDR EMSAMVAALS AVVAGEAAVA PEGASSAACY DYGSAAAATP  120
YTPPSATTAS SPSPSAQLAS PSSSSDARRR RRYRGVRQRP WGKWAAEIRD PHRAARVWLG  180
TFDTAEAAAR AYDVAALQFR GARAKLNFPE SAALPAPTAP RVASVPPPPE WPEGVLESQA  240
PMMMGDGGEY AEYARFLQGA GAPPRLVDQT VARAPQTPST VPVPGAAHHF RPQSSRSEPP  300
PPLPVPRPGF GRPLSLRMTR ARVHTNKVQL PLTRRFR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-21151209463ATERF1
3gcc_A4e-21151209463ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00040.1.g00480.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1205271e-53AC120527.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0011J22 map R10571S, complete sequence.
GenBankAC1478121e-53AC147812.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0073K23 map near R10571S, complete sequence.
GenBankAP0149671e-53AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
GenBankCP0126191e-53CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619856.14e-44ethylene-responsive transcription factor ERF110
TrEMBLB8BND02e-42B8BND0_ORYSI; Uncharacterized protein
STRINGORUFI12G04720.12e-42(Oryza rufipogon)
STRINGONIVA12G03810.12e-42(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98942540
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.12e-19ethylene response factor 110