PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00040.1.g00470.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 184aa    MW: 20252.1 Da    PI: 11.6615
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00040.1.g00470.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.16.8e-16247756
                           AP2  7 rwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56
                                  r+++ +g+W+AeIrdp     +  +r++lg+f+t e Aa a++ a+++++g+
  Zpz_sc00040.1.g00470.1.sm.mk  2 RQRP-WGKWAAEIRDP-----HraARVWLGTFDTVEAAALAYDVAALRFRGA 47
                                  7899.**********7.....338*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.366154IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.8E-28256IPR001471AP2/ERF domain
CDDcd000181.42E-17256No hitNo description
PfamPF008472.1E-10246IPR001471AP2/ERF domain
SMARTSM003802.8E-26260IPR001471AP2/ERF domain
SuperFamilySSF541712.62E-19256IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MRQRPWGKWA AEIRDPHRAA RVWLGTFDTV EAAALAYDVA ALRFRGARAK LNFPESAALP  60
AAPTVPQAAS EPPPARPEGV LESQAAMMMG DGGGEYAEST PGSCRALANR QGSLTRRWRA  120
RLRRHQRCRC PARLTISARR AAVPSIHRSC QFLVRALGGG LHRRQETPQD DTCARAHKDQ  180
IPLT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-20154963ATERF1
3gcc_A5e-20154963ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00040.1.g00470.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1205272e-52AC120527.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0011J22 map R10571S, complete sequence.
GenBankAC1478122e-52AC147812.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0073K23 map near R10571S, complete sequence.
GenBankAK1071252e-52AK107125.1 Oryza sativa Japonica Group cDNA clone:002-124-B10, full insert sequence.
GenBankAL7139022e-52AL713902.2 Oryza sativa chromosome 12, . BAC OJ1494_F10 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAL8448742e-52AL844874.1 Oryza sativa chromosome 12, . BAC OSJNBa0041K23 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149672e-52AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
GenBankAP0149682e-52AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankCP0126192e-52CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
GenBankCP0126202e-52CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
GenBankCU4063552e-52CU406355.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C109D06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006296339.16e-28ethylene-responsive transcription factor ERF112
TrEMBLA0A0D3HRU88e-27A0A0D3HRU8_9ORYZ; Uncharacterized protein
STRINGBostr.23794s0729.1.p7e-28(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4740522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.13e-23ethylene response factor 110