PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00036.1.g00250.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 352aa    MW: 39281.8 Da    PI: 6.9862
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00036.1.g00250.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.44.2e-19133182255
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                    y+GVr++  +g+WvAeIr+p   + r kr +lg+f ta eAa a+++a+++++g
  Zpz_sc00036.1.g00250.1.am.mk 133 AYRGVRQRT-WGKWVAEIREP---N-RgKRLWLGSFPTALEAAHAYDEAARAMYG 182
                                   59****999.**********8...3.35************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.9E-13132182IPR001471AP2/ERF domain
SMARTSM003801.3E-34133196IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-21133191IPR016177DNA-binding domain
PROSITE profilePS5103221.997133190IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.7E-31134192IPR001471AP2/ERF domain
CDDcd000181.39E-28134192No hitNo description
PRINTSPR003677.0E-9134145IPR001471AP2/ERF domain
PRINTSPR003677.0E-9156172IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
LRAGACPSRR GFVWRWIGWT KIDPPFSACV ETIFCSAVVV LLLSPKWEFF EVAVRELGVF  60
LAVHSDCLLA GTRLKKRVRR KSTGPDSIAE TIKRWKEHNE KLHEEYGTRK APAKGSKKGC  120
MAGKGGPENR TCAYRGVRQR TWGKWVAEIR EPNRGKRLWL GSFPTALEAA HAYDEAARAM  180
YGPRARVNFS ESSADATSGC MSALSLLASN VPPADQRSDD KDEVESVETE VHALKVEVND  240
DLGSIHVERK TMEVFQSEEI ILRKEGDVSY DYFHVEDVLE MIIIELNAAK KIEVHENEEY  300
HDGDDGFSLY TDCLAAALQI SAIALQISAA VKSLNKRFPL LPFALAQLPT SL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-14134189662ATERF1
3gcc_A4e-14134189662ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17278RLKKRVR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00302DAPTransfer from AT2G40340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00036.1.g00250.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ8480960.0GQ848096.1 Zoysia japonica cultivar Meyer DREB-like protein 1 (DREB1) mRNA, complete cds.
GenBankGQ8640110.0GQ864011.1 Zoysia japonica cultivar Meyer DREB-like protein 1 (DREB1) gene, complete cds.
GenBankGQ8687110.0GQ868711.1 Zoysia japonica cultivar Palisades DREB-like protein 1 (DREB1) mRNA, complete cds.
GenBankGQ8687120.0GQ868712.1 Zoysia japonica cultivar Palisades DREB-like protein 1 (DREB1) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004968294.11e-131dehydration-responsive element-binding protein 2A isoform X1
SwissprotA2WL191e-111DRE2A_ORYSI; Dehydration-responsive element-binding protein 2A
TrEMBLC8CTX01e-170C8CTX0_9POAL; DREB-like protein 1
STRINGSi002067m1e-129(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP73153551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.15e-35ERF family protein