PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00032.1.g00220.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GATA
Protein Properties Length: 420aa    MW: 45672.4 Da    PI: 5.1814
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00032.1.g00220.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA36.75.8e-12378410131
                          GATA   1 CsnCgttkTplWR..rgpdgnktLCnaCGlyyr 31 
                                   C++Cgt +Tp+WR   gp+g  tLC aCG+ y 
  Zpz_sc00032.1.g00220.1.am.mk 378 CRHCGTYETPQWRicTGPEGRFTLCDACGIQYS 410
                                   *************77799************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004010.0047105149IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.75E-5105156No hitNo description
SMARTSM004010.082217262IPR000679Zinc finger, GATA-type
SMARTSM004015.9E-5372420IPR000679Zinc finger, GATA-type
PROSITE profilePS501149.183372409IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.57E-9372414No hitNo description
Gene3DG3DSA:3.30.50.101.5E-9373411IPR013088Zinc finger, NHR/GATA-type
CDDcd002028.81E-7377409No hitNo description
PfamPF003204.6E-9378409IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MVPGDLPDDE SPAALAEQLF GSGDDPMAFI DDTALEVVAA TGKDGKEEEE LKGLSNKDVF  60
PTLNTKALPE APATAPRTQR KGVRPSQGAA SSLPPALRPG TGAPAKAGRQ CRHCGTEGSY  120
TLCNVCGIQY KRGALLPEYR PLNIPTFSPD LHSNHHQRVI DMARSREEEK KESFLSDADL  180
EAIINDPALQ ALDASGMDEH RDWVLKNAFQ PGTLAPTKAG QQCRHCGTYE TPLWHICTGP  240
EGRFALWGIQ YCNVTLLPEY PPLKTPTSSA LHSDWRQCVI DTARFLEAEW SRSGIGLEAF  300
LRDMVWDMLA ASGHYSKEEL ESLSKAASTL DTMALPEAAA TAQLPQTMGV RWSREAASSP  360
LPALQPGNLA PAKAGQQCRH CGTYETPQWR ICTGPEGRFT LCDACGIQYS NVTVLPEYRP
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00032.1.g00220.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2818535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51080.12e-19GATA transcription factor 6