PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00030.1.g00300.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

GRAS

Protein Properties

Length: 559aa MW: 60026.5 Da PI: 10.3518

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00030.1.g00300.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	333.4	4.3e-102	82	367	31	327
GRAS 31 aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeer 111 a ++++ + R+a +ft AL++rl+ + p+s+ + ++++ ++ f+e++P+lkf+h+taNqaIleav+ + Zpz_sc00030.1.g00300.1.am.mk 82 AVSAASGIGRVAVHFTAALSRRLFP--P------PTSPPPAPPAADHALLYHHFYEACPYLKFAHFTANQAILEAVQDRAK 154 556668999*************9..3......33333333379999***************************** PP GRAS 112 vHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlele 192 vH+iDf+++qGlQWpaL+qaLa Rp+gpp lRiTg+g+p++ ++ l+e+g rLa++A++++vpf f+ ++a+rl++++++ Zpz_sc00030.1.g00300.1.am.mk 155 VHVIDFSLMQGLQWPALIQALALRPGGPPFLRITGIGPPSPPGRDDLREVGLRLADLARSVRVPFAFRGVAANRLDEVRPW 235 ***************************************************************************** PP GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdslea 273 +L+v+pgEa+aVn+vlqlhrll ++ + + ++d+vL++v s++Pkv++vveqeadhn++ Fl+rf+eal yysa+fdsl+a Zpz_sc00030.1.g00300.1.am.mk 236 MLQVSPGEAVAVNSVLQLHRLLGDPSADRAPIDAVLDCVSSMRPKVFTVVEQEADHNKSGFLDRFTEALFYYSAVFDSLDA 316 ***************************************************************************99 PP GRAS 274 klpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpv 327 + +v +++l+rei+++v++ega r+erhe l++Wrerl++aG+ ++ Zpz_sc00030.1.g00300.1.am.mk 317 A---SGGAGDTVAEAYLEREICDIVCAEGAVRKERHEPLQRWRERLSRAGLVAA 367 9...358888999999********************************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	50.375	14	394	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.5E-99	82	367	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 559 aa Download sequence Send to blast
MAMGAFPFQW PVAEPPSAPG PDVGLPPLPM VVPDDAGVAV RDRRGAAGRD APGGGGGRGH 60 PARPPPHELR RRRXXXHATL AAVSAASGIG RVAVHFTAAL SRRLFPPPTS PPPAPPAADH 120 ALLYHHFYEA CPYLKFAHFT ANQAILEAVQ DRAKVHVIDF SLMQGLQWPA LIQALALRPG 180 GPPFLRITGI GPPSPPGRDD LREVGLRLAD LARSVRVPFA FRGVAANRLD EVRPWMLQVS 240 PGEAVAVNSV LQLHRLLGDP SADRAPIDAV LDCVSSMRPK VFTVVEQEAD HNKSGFLDRF 300 TEALFYYSAV FDSLDAASGG AGDTVAEAYL EREICDIVCA EGAVRKERHE PLQRWRERLS 360 RAGLVAARML VGLFSGEGHC RHNHGGKQIY PCVEAAAAVS RFDVQAPRNR TNADSSGFGR 420 RAGAVMRAAA RRVSSKPKRC GGTLQQRKAG YVSETQVREP RSHLRSPRAC AQQRGGEERF 480 GHRSTMRSSK AEGAEPGDRT TCRPAFTCPS ARAALRVSSA HGGRVAGADH GGVQAPFPAC 540 AAARCVRSVW RTTTQCFSG

Sequence ? help Back to Top

Protein Sequence Length: 559 aa Download sequence Send to blast

MAMGAFPFQW PVAEPPSAPG PDVGLPPLPM VVPDDAGVAV RDRRGAAGRD APGGGGGRGH  60
PARPPPHELR RRRXXXHATL AAVSAASGIG RVAVHFTAAL SRRLFPPPTS PPPAPPAADH  120
ALLYHHFYEA CPYLKFAHFT ANQAILEAVQ DRAKVHVIDF SLMQGLQWPA LIQALALRPG  180
GPPFLRITGI GPPSPPGRDD LREVGLRLAD LARSVRVPFA FRGVAANRLD EVRPWMLQVS  240
PGEAVAVNSV LQLHRLLGDP SADRAPIDAV LDCVSSMRPK VFTVVEQEAD HNKSGFLDRF  300
TEALFYYSAV FDSLDAASGG AGDTVAEAYL EREICDIVCA EGAVRKERHE PLQRWRERLS  360
RAGLVAARML VGLFSGEGHC RHNHGGKQIY PCVEAAAAVS RFDVQAPRNR TNADSSGFGR  420
RAGAVMRAAA RRVSSKPKRC GGTLQQRKAG YVSETQVREP RSHLRSPRAC AQQRGGEERF  480
GHRSTMRSSK AEGAEPGDRT TCRPAFTCPS ARAALRVSSA HGGRVAGADH GGVQAPFPAC  540
AAARCVRSVW RTTTQCFSG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	4e-46	81	394	32	353	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Transcription coactivator of the zinc finger transcription factors GAF1/IDD2 and ENY/IDD1 in regulation of gibberellin homeostasis and signaling (PubMed:25035403). No effect of the BOI proteins on its stability. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Positively regulates XERICO expression. In contrast to RGA, it is less sensitive to GA. Its activity is probably regulated by other phytohormones such as auxin and ethylene. {ECO:0000269\|PubMed:11487693, ECO:0000269\|PubMed:11606551, ECO:0000269\|PubMed:11606552, ECO:0000269\|PubMed:14973286, ECO:0000269\|PubMed:15128937, ECO:0000269\|PubMed:16034591, ECO:0000269\|PubMed:17933900, ECO:0000269\|PubMed:25035403, ECO:0000269\|PubMed:9389651}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00030.1.g00300.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015624056.1	1e-168	DELLA protein SLN1
Swissprot	Q9LQT8	1e-100	GAI_ARATH; DELLA protein GAI
TrEMBL	A0A1E5V2M3	1e-170	A0A1E5V2M3_9POAL; DELLA protein GAI (Fragment)
STRING	OMERI01G23850.1	1e-168	(Oryza meridionalis)
STRING	MLOC_73617.2	1e-168	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP998	38	138

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14920.1	4e-99	GRAS family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Gallego-Giraldo C, et al. Role of the gibberellin receptors GID1 during fruit-set in Arabidopsis. Plant J., 2014. 79(6): p. 1020-1032 [PMID:24961590] Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Marín-de la Rosa N, et al. Genome Wide Binding Site Analysis Reveals Transcriptional Coactivation of Cytokinin-Responsive Genes by DELLA Proteins. PLoS Genet., 2015. 11(7): p. e1005337 [PMID:26134422] Shi H,Wei Y,Wang Q,Reiter RJ,He C Melatonin mediates the stabilization of DELLA proteins to repress the floral transition in Arabidopsis. J. Pineal Res., 2016. 60(3): p. 373-9 [PMID:26887824] Lee SA, et al. Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue. Mol Plant, 2016. 9(6): p. 870-84 [PMID:26970019] Qu J,Kang SG,Hah C,Jang JC Molecular and cellular characterization of GA-Stimulated Transcripts GASA4 and GASA6 in Arabidopsis thaliana. Plant Sci., 2016. 246: p. 1-10 [PMID:26993231] Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins. Plant Signal Behav, 2016. 11(6): p. e1181245 [PMID:27159137] Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling. Nat Plants, 2016. 2: p. 16013 [PMID:27249348] Wang H, et al. The DELLA-CONSTANS Transcription Factor Cascade Integrates Gibberellic Acid and Photoperiod Signaling to Regulate Flowering. Plant Physiol., 2016. 172(1): p. 479-88 [PMID:27406167] Li W,Wang H,Yu D Arabidopsis WRKY Transcription Factors WRKY12 and WRKY13 Oppositely Regulate Flowering under Short-Day Conditions. Mol Plant, 2016. 9(11): p. 1492-1503 [PMID:27592586] Liu B,De Storme N,Geelen D Gibberellin Induces Diploid Pollen Formation by Interfering with Meiotic Cytokinesis. Plant Physiol., 2017. 173(1): p. 338-353 [PMID:27621423] Matsuoka K, et al. Differential Cellular Control by Cotyledon-Derived Phytohormones Involved in Graft Reunion of Arabidopsis Hypocotyls. Plant Cell Physiol., 2016. 57(12): p. 2620-2631 [PMID:27986917] Zentella R, et al. The Arabidopsis O-fucosyltransferase SPINDLY activates nuclear growth repressor DELLA. Nat. Chem. Biol., 2017. 13(5): p. 479-485 [PMID:28244988] Zhang Y, et al. GA-DELLA pathway is involved in regulation of nitrogen deficiency-induced anthocyanin accumulation. Plant Cell Rep., 2017. 36(4): p. 557-569 [PMID:28275852] Zhang L,Chen L,Yu D Transcription Factor WRKY75 Interacts with DELLA Proteins to Affect Flowering. Plant Physiol., 2018. 176(1): p. 790-803 [PMID:29133369] Nelson SK,Ariizumi T,Steber CM Biology in the Dry Seed: Transcriptome Changes Associated with Dry Seed Dormancy and Dormancy Loss in the Arabidopsis GA-Insensitive sleepy1-2 Mutant. Front Plant Sci, 2017. 8: p. 2158 [PMID:29312402] Liu B,De Storme N,Geelen D Cold-Induced Male Meiotic Restitution in Arabidopsis thaliana Is Not Mediated by GA-DELLA Signaling. Front Plant Sci, 2018. 9: p. 91 [PMID:29459879] Zhang Y, et al. DELLA proteins negatively regulate dark-induced senescence and chlorophyll degradation in Arabidopsis through interaction with the transcription factor WRKY6. Plant Cell Rep., 2018. 37(7): p. 981-992 [PMID:29574486] Felipo-Benavent A, et al. Regulation of xylem fiber differentiation by gibberellins through DELLA-KNAT1 interaction. Development, 2019. [PMID:30389856] Wright DA, et al. Recovery of YAC-end sequences through complementation of an Escherichia coli pyrF mutation. Nucleic Acids Res., 1997. 25(13): p. 2679-80 [PMID:9185581]