PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00026.1.g00140.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 569aa    MW: 62145 Da    PI: 9.7759
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00026.1.g00140.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM161.43.5e-501382871128
                           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......................kvkaeekewy 59 
                                   lppGfrFhPtdeel+ +yL++++ + ++++  +i++vdiyk++Pw Lp+                      +++ ++kewy
  Zpz_sc00026.1.g00140.1.am.mk 138 LPPGFRFHPTDEELILHYLRNRAGSLPCPE-AIIADVDIYKFDPWALPRehpsfpslasddpcvqdphystMAAYGDKEWY 217
                                   79*************************999.88**************95589**********9999988754444899*** PP

                           NAM  60 fFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                   fFs+rd+ky++g r+nra+ sgyWkatg+dk+++s+ +ge+vg+kk Lvfykgr pkg+kt+W+mheyrl
  Zpz_sc00026.1.g00140.1.am.mk 218 FFSPRDRKYPNGIRPNRAAGSGYWKATGTDKPIHSTtTGENVGVKKALVFYKGRPPKGTKTNWIMHEYRL 287
                                   **********************************9988999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.06E-58131320IPR003441NAC domain
PROSITE profilePS5100558.72138320IPR003441NAC domain
PfamPF023658.3E-27139287IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 569 aa     Download sequence    Send to blast
MGSCQEKKKI CRGRRKPGPG RSPRKAARWK NRPPTRAGAA EFQRQPSWGP PSPRISGGIT  60
PDPRPTTENG LAPGPRVRRK RVQAAKNPRA YKQALPSRLC GERRGRSITI SAPARSVDPS  120
RAWERLVPMV MANPATSLPP GFRFHPTDEE LILHYLRNRA GSLPCPEAII ADVDIYKFDP  180
WALPREHPSF PSLASDDPCV QDPHYSTMAA YGDKEWYFFS PRDRKYPNGI RPNRAAGSGY  240
WKATGTDKPI HSTTTGENVG VKKALVFYKG RPPKGTKTNW IMHEYRLAAD ANAGHAYHPM  300
KFRNASMRLD DWVLCRIYNK TSHASPTPVP SFPDHEQDER CGFDEALYTT SSSAGMNILQ  360
GGVAASAFPM QQAATGGTQM MPRIQSFSEL LNEYSLAQFF DDGGVQDAVP HLDQQHHAPL  420
LGHPVASHLL VNNGNSNMSG QLLLANSTAS TSAAAAGDGS MVGGKRMRTE ESWSHHQAAA  480
VKKPNSSCIG ATGVYAETPW NCEEQCSADE DHYPGHIPCS VYLPVSRLGS QAGRRVRSAH  540
AGATVVALHG VLELVQHDAA WPPGGRSHA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-6413732419172NAC domain-containing protein 19
3swm_B2e-6413732419172NAC domain-containing protein 19
3swm_C2e-6413732419172NAC domain-containing protein 19
3swm_D2e-6413732419172NAC domain-containing protein 19
3swp_A2e-6413732419172NAC domain-containing protein 19
3swp_B2e-6413732419172NAC domain-containing protein 19
3swp_C2e-6413732419172NAC domain-containing protein 19
3swp_D2e-6413732419172NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00026.1.g00140.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2435141e-128AK243514.1 Oryza sativa Japonica Group cDNA, clone: J100075D15, full insert sequence.
GenBankJN9823131e-128JN982313.1 Oryza sativa Japonica Group NAC transcription factor 58 (NAC58) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025798103.11e-151NAC domain-containing protein 10-like
TrEMBLA0A3G2LN221e-167A0A3G2LN22_9POAL; NAC transcription factor
STRINGSi036303m1e-141(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123736123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.13e-75NAC-like, activated by AP3/PI