PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00025.1.g00470.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 246aa    MW: 26585.5 Da    PI: 8.205
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00025.1.g00470.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.63.2e-18134183356
                           AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                                   y+G+r+++ +g+W++eIrdp+    +  r ++g+f+ta eAa+a++a +++++g+
  Zpz_sc00025.1.g00470.1.am.mk 134 YRGIRQRP-WGKWASEIRDPV----KgVRLWIGTFDTAAEAARAYDAEARRIHGA 183
                                   9*******.**********75....44*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.234133190IPR001471AP2/ERF domain
SMARTSM003802.9E-31133196IPR001471AP2/ERF domain
CDDcd000186.69E-18134190No hitNo description
PfamPF008472.3E-10134182IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-29134191IPR001471AP2/ERF domain
PRINTSPR003677.0E-11134145IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-20134191IPR016177DNA-binding domain
PRINTSPR003677.0E-11156172IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MPSPPRAPAS NNNGNRLAIS ETPNTQTEQT YCKPLQRPTK MCGRATVLRP PARRRGLSLV  60
GEDTGVLSDD GSEQWEAAFR DLGDSDSDSD GDTIVPLLPR AFRTSGSTAS VKSNPTPAAA  120
RLIRRMTRRR GGPYRGIRQR PWGKWASEIR DPVKGVRLWI GTFDTAAEAA RAYDAEARRI  180
HGARARANFP PEASTTSTCL TSMAEAENSS DASAAPMELE CCPDGVLDSL LAGFDDVSSS  240
NSNWFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-19130190263ATERF1
3gcc_A2e-19130190263ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00025.1.g00470.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D9XC341e-37A0A0D9XC34_9ORYZ; Uncharacterized protein
STRINGLPERR09G02840.12e-38(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3555234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.12e-17ERF family protein