PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00021.1.g00620.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | RAV | ||||||||
Protein Properties | Length: 730aa MW: 79302.6 Da PI: 10.0726 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.9 | 5.8e-19 | 108 | 155 | 4 | 55 |
AP2 4 kGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +GVr ++ +gr++AeIrd + r +r++lg+f+t+e Aa+a++aa+++l+g Zpz_sc00021.1.g00620.1.am.mk 108 RGVRKRP-WGRYAAEIRDpV-----RkARVWLGTFDTPEAAARAYDAAARRLRG 155 9******.**********44.....55**************************9 PP | |||||||
2 | B3 | 35.6 | 1.7e-11 | 659 | 728 | 17 | 92 |
E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 lp f++++ k ++ +tl de ++++ + +++ l++GW++F+ +++L +gD vvF+l+++++f+ Zpz_sc00021.1.g00620.1.am.mk 659 GLPVGFCRKYLPK--RDERITLVDEADEEFDTLYL--APKRG--LSAGWRGFAVDHELVDGDCVVFELVEQTKFKV 728 69********433..4557***************4..44444..9**********************998777744 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 5.7E-29 | 106 | 169 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.354 | 106 | 163 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.4E-12 | 107 | 155 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.7E-8 | 107 | 118 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-20 | 107 | 164 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 9.7E-28 | 108 | 163 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.65E-14 | 108 | 165 | No hit | No description |
PRINTS | PR00367 | 1.7E-8 | 129 | 145 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 3.3E-15 | 605 | 621 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.26E-18 | 606 | 730 | No hit | No description |
SMART | SM01019 | 9.1E-5 | 642 | 729 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.109 | 643 | 730 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.73E-14 | 658 | 729 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.3E-15 | 659 | 729 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 4.8E-9 | 659 | 728 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 730 aa Download sequence Send to blast |
LPLLVGATSH WWELRGTKKI GAALLAGTPG PNTWHVPPPD SPGLAAPSGR HPPHSILNPV 60 AAATTPTRAC RGTGTTSMAP PRSSTSLPSG SSSSSTGLEP KEQPLRLRGV RKRPWGRYAA 120 EIRDPVRKAR VWLGTFDTPE AAARAYDAAA RRLRGPGAAT NYPVADAVPS EGSSSSSSCQ 180 DLDSRPSVAV EATAPPSLDL SLGLPATMAA GHPCLFVDQT ETTVPDVPAL IQFLPLKSEE 240 EAGESVWSSS PGLGDAAPTV GVGLDLSLSW PAATAMFGCT GSPTELARGY RRGYCRSSPA 300 APLALRVSSS VKICIHSRRS PHPFLLSKVS AGAEFKFESV AVRLPPRCTP CMHLSGPAKP 360 QRDGQGRRFM NRVHKPKTPT PSFSLAVRPI QLLCYAFCSP SKPAHPRNRK RWDSERGRSM 420 ADAASYEEQR RRLIEANKRK LEELQLHHLS AAVRDAASGM LSPVGPASLY LPLFLLLQRS 480 FIYAAAVGLL SSSDLGLARQ AKKRKLRVPR HAAGEEAEPL RRSGRVASIP EKPNYRDVRA 540 CVPIRVFINR STCAQVVPDF ERRIRRSSGR GRRSDLDNRV YATEEERTYA ITKAEEVAQG 600 LGSGFPSFVK PMTQSHVTGG FWLVKSWRLL PITSCCQFPL SFTSVEVDIS FGGLMELQGL 660 PVGFCRKYLP KRDERITLVD EADEEFDTLY LAPKRGLSAG WRGFAVDHEL VDGDCVVFEL 720 VEQTKFKVTF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-17 | 106 | 163 | 14 | 72 | Ethylene-responsive transcription factor ERF096 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00021.1.g00620.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU970153 | 9e-64 | EU970153.1 Zea mays clone 340982 ethylene-responsive transcription factor 4 mRNA, complete cds. | |||
GenBank | EU975388 | 9e-64 | EU975388.1 Zea mays clone 489369 ethylene-responsive transcription factor 4 mRNA, complete cds. | |||
GenBank | KJ727706 | 9e-64 | KJ727706.1 Zea mays clone pUT5645 AP2-EREBP transcription factor (EREB209) gene, partial cds. |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1756 | 38 | 103 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19184.1 | 1e-39 | B3 family protein |