PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00018.1.g00870.1.am.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 371aa    MW: 39843.1 Da    PI: 10.7184
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00018.1.g00870.1.am.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.71.6e-30305362359
                                     -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                            WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                     D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +d +++++tYegeHnh+
  Zpz_sc00018.1.g00870.1.am.mkhc 305 DEYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCVDDSSTLIVTYEGEHNHN 362
                                     9*************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105332.2E-9263301IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.802.7E-33291363IPR003657WRKY domain
PROSITE profilePS5081130.01298364IPR003657WRKY domain
SuperFamilySSF1182901.02E-26301363IPR003657WRKY domain
SMARTSM007749.6E-37303363IPR003657WRKY domain
PfamPF031063.3E-26305361IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
SDLLLGRSQI ILLWTLWKSS RGGRALSALG ARVMDEVEAA NRAAVESCHR VLALLAQPHQ  60
DPAQLTSLAA GTDEACAKFR KVVSLLSNGG VGGEAGTSGG SGSHPKAKVA SRRQNPGLFS  120
QKGFLDSNTP VVVLNSAQPS TSSAQMYPRN RALDVQSVNP LGGPPKMVQP LSAHFQFGNV  180
SSRYHFQNQQ QQKLQAKMFK RSNSGINLKF DSMGATMSSA RSFLSSLSME GSVASLDGKS  240
SSFHLIGGPA MSDPVNAQQA PRRRCTGRGE DGTGKCAVTG SRKLRVKRSI KVPAISNKIA  300
DIPPDEYSWR KYGQKPIKGS PHPRGYYKCS SVRGCPARKH VERCVDDSST LIVTYEGEHN  360
HNRMPTQSAQ A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-213013651275WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00018.1.g00870.1.am.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795417.10.0protein WRKY1-like isoform X1
SwissprotQ93WU61e-87WRK74_ARATH; Probable WRKY transcription factor 74
TrEMBLA0A2S3IK150.0A0A2S3IK15_9POAL; Uncharacterized protein
TrEMBLA0A2T7C3I70.0A0A2T7C3I7_9POAL; Uncharacterized protein
STRINGPavir.Ia01239.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28593887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28650.14e-76WRKY DNA-binding protein 74
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]